Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 6e-26
seq4 127 2e-24
seq7 116 4e-21
seq5 105 8e-18
seq2 89.7 6e-13
>seq1
Length=19836964
Score = 132 bits (146), Expect = 6e-26
Identities = 300/447 (67%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || ||||| | || | || ||||| ||||| | | || || ||
Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| | |||| || ||| || | | ||||||||||||||||| |||| || || ||
Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368
| || ||||| | ||||||||| || |||| |||| | | |||| | ||
Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 1801814
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| ||||| || ||||| | || ||||| || || |||||| ||| ||| ||
Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
||||| || |||||| ||| || ||||| ||||||||||| ||||| | | | | |
Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAG-A 1801933
Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| | | |||||| ||| || |||||| ||||||||| || | || || || ||
Sbjct 1801934 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1801993
Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607
||||| || ||| | ||||| |||| || ||| ||| ||| | | | |
Sbjct 1801994 AGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGAA 1802053
Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634
|||||||| | ||| ||||| |||||
Sbjct 1802054 CCTCTCAGGCTTCTTCAGAAACTCCAC 1802080
>seq4
Length=14320061
Score = 127 bits (140), Expect = 2e-24
Identities = 279/414 (67%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | ||| ||||| || | || | |||||| || | | |||||
Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTTCAAAT 12447139
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || | || || || | ||| ||||| | ||||||||| || |
Sbjct 12447140 CCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 12447196
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| || | | | |||| | || || |||||||| ||||| | |||||||| ||
Sbjct 12447197 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 12447256
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||||| ||| | | || |||||||| || ||| ||| || |||||||||
Sbjct 12447257 GGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAACA 12447316
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | ||||| || | || ||| || ||| || |||||| ||
Sbjct 12447317 AACATCTCAACAAACTCAGAACCGGAA-ATCGAGAAGAAAGGCACACCAGCTTCACCAGC 12447375
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580
||| ||| || | ||| || || || ||||| || ||| || || ||||
Sbjct 12447376 AATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCTTT 12447435
Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634
|| ||| ||| ||| || | ||||||| || | ||| ||||| || ||
Sbjct 12447436 AGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGAC 12447489
Score = 82.4 bits (90), Expect = 9e-11
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || ||||| || || ||||||||||| || || | ||| ||| ||||| | ||
Sbjct 320838 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGC 320779
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| | |||||||| | |||||| |||| || | | ||||||||| | ||
Sbjct 320778 GACATCAAATGGTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCA 320719
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--- 107344
|| | ||| | ||||| ||| || |||| | | | || | || | || ||||
Sbjct 320718 ACCCTCATCAGCATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGA--CTTTCAAGAGGT 320661
Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
|| || ||||||| ||||| | ||||||||| || | ||| | || ||
Sbjct 320660 AAGATC-TCTCAAGTGTTTTAAATCCAAAGTAATCATATTCAAAATCACG 320612
>seq7
Length=17055980
Score = 116 bits (128), Expect = 4e-21
Identities = 196/280 (70%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||||||||||||||| |||||||| || ||||| || || || | ||||||||| ||
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485
Query 9341 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | || |||||| | | |||| | || || |||||||||||||| || || ||||||
Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425
Query 9399 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456
|| || |||||| || | ||||| | ||| | |||||| || || ||||
Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 4202367
Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516
||||||| | ||||||||| | | || | ||| || ||| || || | ||| |
Sbjct 4202366 CAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 4202307
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| || | |||| || | ||| ||||| || || || ||
Sbjct 4202306 CAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267
>seq5
Length=16150104
Score = 105 bits (116), Expect = 8e-18
Identities = 192/279 (69%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| ||||| | || ||||| || || || | |||||||| ||
Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | ||| ||||| | | ||| ||||||| || ||||||||||||||||| |||||
Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311
Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458
|| || || | || | || || ||||| | ||| || || ||||||||
Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCC 10841371
Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518
||||| | ||||||||| | | || | || || ||| || || | ||| ||
Sbjct 10841372 ACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCA 10841431
Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557
|| | |||| ||| | || |||||||||||||| |||
Sbjct 10841432 GCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470
>seq2
Length=13294645
Score = 89.7 bits (98), Expect = 6e-13
Identities = 133/188 (71%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351
|| || ||||| || || | || || |||||| || || ||||||||||| |||||
Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649
Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
|||| ||| |||| | |||||| ||||||||||||||||| || ||||| || ||
Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589
Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471
|| | | | |||||| || | |||| | || | ||| ||||| ||||| |
Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532
Query 117472 GCCTTCTT 117479
|| |||||
Sbjct 9186531 GCTTTCTT 9186524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589970054974680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |