Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 seq3 87.8 2e-12 >seq5 Length=16150104 Score = 123 bits (136), Expect = 3e-23 Identities = 228/332 (69%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 166686 AACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTG 166745 || |||| | ||||||||||| |||||||| | || || ||||| || || | ||| || Sbjct 10049284 AATTGGATATTGAACCCATTTTATATGATGAGAGTCGCCGGTATACTGGGCGCTGCTTTT 10049343 Query 166746 CTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCA 166805 || | | || ||||||| || ||| | | | | ||| || ||||| | ||| Sbjct 10049344 CTATGCACTATTCATGGTGCTATTGTAAAATATCTTTTATATAAAAATGGTAATGGTGCA 10049403 Query 166806 AATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCA 166865 ||||| || | || || | | | ||||| |||||||| ||||||||| | || ||| Sbjct 10049404 AATACATTAGATGCTTTTAATACAAATCAAGTCGAAGAAACTTATTCAATGTTCACCGCA 10049463 Query 166866 AACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTC 166925 ||| ||| || || || || || || |||||||| |||| || ||| |||| Sbjct 10049464 AACTGCTTTTTATCACAAATATTTGGGGTTGCGTTTTCCAATAGAAGTCAGTT--ATTTA 10049521 Query 166926 TTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTT 166985 |||||| | ||||| | ||| || | | |||| | ||| | | || | || | ||| Sbjct 10049522 TTTATGTTATTTGTACTTGTAATTGATATGTGTATGAGTGCTCTTGG-AGTAGTCTTCTA 10049580 Query 166986 GCTCTCAACCTTCGTGCTTATGACTTTGTTTC 167017 ||| | ||||| ||||| |||| ||| |||| Sbjct 10049581 GCTTTTAACCTACGTGCCTATGGTTTTTTTTC 10049612 >seq3 Length=15215380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 165015 AACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCT 165074 |||| | ||||||||| | |||||||||| |||||| | | || | | ||||| | Sbjct 6417513 AACCGTTGATGAATGGCTATACAACGGTGTTCCTTATGAACTAATTTTTCTACACTTTTT 6417454 Query 165075 CATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATG 165132 | ||||||||||| || |||||||||||||||||||| || ||| || |||||| Sbjct 6417453 ACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 6417396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563650534327680