Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 107 1e-18 seq6 98.7 6e-16 seq642 93.3 3e-14 seq1 93.3 3e-14 seq4 87.8 1e-12 >seq5 Length=16150104 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | || | || | || ||||||||||| ||||| || Sbjct 6389245 TCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAA 6389186 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| ||| |||||||| | || | ||||||||||| |||||| |||||| || Sbjct 6389185 ATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGAC--AT 6389128 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || || || || | ||||||||| || ||||| || || || Sbjct 6389127 --TGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTT 6389070 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 6389069 CACGAAGATCTGCATGTT 6389052 >seq6 Length=18523719 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||||| || ||| ||||| || || || |||| ||| | || |||| Sbjct 17514430 CAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATC 17514371 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| || || || || |||| || |||||| | || | ||| |||||||| Sbjct 17514370 CTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTC 17514311 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTA 34944 |||||| ||||| | ||||||| || | |||||| || | || | Sbjct 17514310 CTGAATCTTTGCCTTGAC----GTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAA 17514255 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || || || || |||||||| ||||||||| Sbjct 17514254 TGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCATA 17514217 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829 ||||||||| | ||| ||| ||||| ||||| || || | |||| | || | || Sbjct 1443198 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAG--TACGGCCGTCT 1443255 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| ||| |||||||| || || || | |||||| || | || | ||||||||||| Sbjct 1443256 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 1443315 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| ||| | || | ||| | ||||| |||| ||| || || Sbjct 1443316 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 1443375 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||||||||| || ||||||||||| Sbjct 1443376 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 >seq642 Length=6837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829 ||||||||| | ||| ||| ||||| ||||| || || | |||| | || | || Sbjct 159 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAG--TACGGCCGTCT 216 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| ||| |||||||| || || || | |||||| || | || | ||||||||||| Sbjct 217 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 276 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| ||| | || | ||| | ||||| |||| ||| || || Sbjct 277 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 336 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||||||||| || ||||||||||| Sbjct 337 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq1 Length=19836964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| | | |||||||||| || || ||||| ||||| || |||| Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | | || |||||||| || ||||| || || || || ||||| || |||| Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | ||| |||||||| |||||| || || | |||| || | |||||| Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | |||||| || || ||||| || || ||||||||||| ||||| || Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992 >seq4 Length=14320061 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | ||| | || || ||||| |||||||| || Sbjct 6306144 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 6306203 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | || |||||||| ||||| ||||| | Sbjct 6306204 AATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 6306261 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || || ||| || |||| ||| || || || || || || || | Sbjct 6306262 T--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTT 6306319 Query 34966 TCACAAAGATCTGCATATT 34984 |||| ||||||||||| || Sbjct 6306320 TCACGAAGATCTGCATCTT 6306338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627835420296