Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 1e-18
seq6 98.7 6e-16
seq642 93.3 3e-14
seq1 93.3 3e-14
seq4 87.8 1e-12
>seq5
Length=16150104
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 8/198 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| | || | || | || ||||||||||| ||||| ||
Sbjct 6389245 TCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAA 6389186
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|||| ||| |||||||| | || | ||||||||||| |||||| |||||| ||
Sbjct 6389185 ATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGAC--AT 6389128
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || || || || || | ||||||||| || ||||| || || ||
Sbjct 6389127 --TGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTT 6389070
Query 34967 CACAAAGATCTGCATATT 34984
||| ||||||||||| ||
Sbjct 6389069 CACGAAGATCTGCATGTT 6389052
>seq6
Length=18523719
Score = 98.7 bits (108), Expect = 6e-16
Identities = 153/218 (70%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| || | ||||| || ||| ||||| || || || |||| ||| | || ||||
Sbjct 17514430 CAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATC 17514371
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
||||||||||| || || || || |||| || |||||| | || | ||| ||||||||
Sbjct 17514370 CTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTC 17514311
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTA 34944
|||||| ||||| | ||||||| || | |||||| || | || |
Sbjct 17514310 CTGAATCTTTGCCTTGAC----GTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAA 17514255
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||||| || || || || |||||||| |||||||||
Sbjct 17514254 TGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCATA 17514217
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829
||||||||| | ||| ||| ||||| ||||| || || | |||| | || | ||
Sbjct 1443198 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAG--TACGGCCGTCT 1443255
Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889
|||| ||| |||||||| || || || | |||||| || | || | |||||||||||
Sbjct 1443256 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 1443315
Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| ||| ||| | || | ||| | ||||| |||| ||| || ||
Sbjct 1443316 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 1443375
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || ||||||||||| || |||||||||||
Sbjct 1443376 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
>seq642
Length=6837
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829
||||||||| | ||| ||| ||||| ||||| || || | |||| | || | ||
Sbjct 159 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAG--TACGGCCGTCT 216
Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889
|||| ||| |||||||| || || || | |||||| || | || | |||||||||||
Sbjct 217 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 276
Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| ||| ||| | || | ||| | ||||| |||| ||| || ||
Sbjct 277 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 336
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || ||||||||||| || |||||||||||
Sbjct 337 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq1
Length=19836964
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813
|||||| |||| | | |||||||||| || || ||||| ||||| || ||||
Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163
Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873
|| | | | || |||||||| || ||||| || || || || ||||| || ||||
Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103
Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933
| ||| |||||||| |||||| || || | |||| || | ||||||
Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| | |||||| || || ||||| || || ||||||||||| ||||| ||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992
>seq4
Length=14320061
Score = 87.8 bits (96), Expect = 1e-12
Identities = 140/199 (70%), Gaps = 8/199 (4%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| | ||| | ||| | || || ||||| |||||||| ||
Sbjct 6306144 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 6306203
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | ||| |||||||| | || | || |||||||| ||||| ||||| |
Sbjct 6306204 AATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 6306261
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| || || ||| || |||| ||| || || || || || || || |
Sbjct 6306262 T--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTT 6306319
Query 34966 TCACAAAGATCTGCATATT 34984
|||| ||||||||||| ||
Sbjct 6306320 TCACGAAGATCTGCATCTT 6306338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324627835420296
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