Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq4 111 2e-19 >seq7 Length=17055980 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | || |||||| ||||||||| Sbjct 15540845 CCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACCA 15540786 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||| ||||||||| | || | || || || |||| Sbjct 15540785 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGAA 15540726 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | |||||| || || || ||| ||| | ||||||| ||| || || ||||| ||| Sbjct 15540725 ACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATATT 15540666 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || |||||||| |||| Sbjct 15540665 CCTTCAATGCTATCATCCTTCAT 15540643 >seq4 Length=14320061 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | || |||| ||| | || | | |||||||||||||||| Sbjct 321165 CCTCCTTGGTCAACATAACGAGCCGTATCGTTGAATACGCGCAGCATTGGGACAATACCA 321106 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||| || |||||| | || | |||||| || |||| Sbjct 321105 TTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGAA 321046 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | ||||||| ||| || || ||||| || Sbjct 321045 ACACCAATACCCCCAGCGGATTTGCTTATAACAGCACACTCTTTTAGTGTTTCATAGATA 320986 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || ||||||||| ||||| Sbjct 320985 CCCTCAATGCTATCATCTTTCATA 320962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| ||| || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 320827 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 320768 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGT--ATACCTATAGATACACGCATT 48716 ||||| | || |||||| | |||| |||| ||| || || | || || | ||| Sbjct 320767 GTATGTCTTGATCACAGAAGCAATAT--CATTCTTGTGGATGCCAACAGCAACCCTCATC 320710 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | |||||| ||||| |||| ||| | | |||||| || || ||| | || Sbjct 320709 AGCATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTAAGATCTCTCA 320650 Query 48777 AATGTTTTAAAACCAAAATA 48796 | ||||||||| ||||| || Sbjct 320649 AGTGTTTTAAATCCAAAGTA 320630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098562593480