Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq7 114 1e-20
seq4 111 2e-19
>seq7
Length=17055980
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||||| || | || | || |||||| |||||||||
Sbjct 15540845 CCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACCA 15540786
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||| || || ||| ||||||||| | || | || || || ||||
Sbjct 15540785 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGAA 15540726
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| |||||| || || || ||| ||| | ||||||| ||| || || ||||| |||
Sbjct 15540725 ACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATATT 15540666
Query 48540 CCTTCTATACTATCATCTATCAT 48562
||||| || |||||||| ||||
Sbjct 15540665 CCTTCAATGCTATCATCCTTCAT 15540643
>seq4
Length=14320061
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | || |||| ||| | || | | ||||||||||||||||
Sbjct 321165 CCTCCTTGGTCAACATAACGAGCCGTATCGTTGAATACGCGCAGCATTGGGACAATACCA 321106
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || | ||||| || || ||| || |||||| | || | |||||| || ||||
Sbjct 321105 TTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGAA 321046
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| ||||| || || ||| ||| | ||||||| ||| || || ||||| ||
Sbjct 321045 ACACCAATACCCCCAGCGGATTTGCTTATAACAGCACACTCTTTTAGTGTTTCATAGATA 320986
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || || ||||||||| |||||
Sbjct 320985 CCCTCAATGCTATCATCTTTCATA 320962
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| ||| || | || |||||||||||| | |||||| ||| || | ||| |
Sbjct 320827 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 320768
Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGT--ATACCTATAGATACACGCATT 48716
||||| | || |||||| | |||| |||| ||| || || | || || | |||
Sbjct 320767 GTATGTCTTGATCACAGAAGCAATAT--CATTCTTGTGGATGCCAACAGCAACCCTCATC 320710
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
| ||| | |||||| ||||| |||| ||| | | |||||| || || ||| | ||
Sbjct 320709 AGCATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTAAGATCTCTCA 320650
Query 48777 AATGTTTTAAAACCAAAATA 48796
| ||||||||| ||||| ||
Sbjct 320649 AGTGTTTTAAATCCAAAGTA 320630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562098562593480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |