Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq762 131 1e-25 seq3 105 5e-18 seq642 104 2e-17 seq1 86.0 5e-12 >seq6 Length=18523719 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || ||||| ||||| || ||||| || || ||||| || ||| Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||| || || || | | ||| || || || ||| Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||||||||| || ||| ||| ||| | || | |||||||| | || || Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 17513809 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 17513808 TCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| || || || || || ||||||||||| | ||||| | | || || Sbjct 1438296 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTC 1438355 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||| ||||| || || || || | | ||| ||||| || ||||| ||||| ||||| || Sbjct 1438356 CAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTG 1438415 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || ||| || | || | |||||||| ||||||| || || |||| || || Sbjct 1438416 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 1438475 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || || || |||||||| Sbjct 1438476 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || | |||||||| ||||| || || ||||||||||| || Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| || || || || || || | | |||||| || || || Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||| ||| || || | || | ||||| || | || || Sbjct 17514324 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACC 17514265 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| ||||| | ||||| ||||| |||||||| Sbjct 17514264 TCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||| ||||| || || || ||||||||||| | ||| | | | || || Sbjct 1443198 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTC 1443257 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||| ||||| || || || || | | || ||||| || ||||| || || || || || Sbjct 1443258 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTG 1443317 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || ||| || | || | |||||||| |||| || || || |||| || || Sbjct 1443318 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTT 1443377 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || |||||||| Sbjct 1443378 CCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| || ||||| || ||||||||||| || | || | |||| || Sbjct 1438004 ACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCCTCG 1438063 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| || || || || || ||||| |||||||| Sbjct 1438064 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTTATCTTGG 1438123 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 || || || || | || | ||||| || | ||||| || || |||| Sbjct 1438124 ATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGTGTGA 1438175 >seq762 Length=4953 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| || || || || || ||||||||||| | ||||| | | || || Sbjct 160 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTC 219 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||| ||||| || || || || | | ||| ||||| || ||||| ||||| ||||| || Sbjct 220 CAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTG 279 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || ||| || | || | |||||||| ||||||| || || |||| || || Sbjct 280 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 339 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || || || |||||||| Sbjct 340 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 >seq3 Length=15215380 Score = 105 bits (116), Expect = 5e-18 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| | ||||| ||||| ||||| || || || ||||| | Sbjct 11243942 TTCCACCACGGAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCG 11243883 Query 101301 CGATAGTTCTGGC-ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| | | ||| || | || || || ||||| || | | ||| || || || Sbjct 11243882 CTAAAGTCGCGACCATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGT 11243823 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 | |||||||||||||||||||| || || ||| | || | | ||||| |||| Sbjct 11243822 TGGATGCCTTCTTTATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCA 11243763 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||| || || || || ||||| || ||||| |||||||| Sbjct 11243762 ACCTCAAGAGTGATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713 >seq642 Length=6837 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||| ||||| || || || ||||||||||| | ||| | | | || || Sbjct 159 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTC 218 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||| ||||| || || || || | | || ||||| || ||||| || || || || || Sbjct 219 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTG 278 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || ||| || | || | |||||||| |||| || || || |||| || || Sbjct 279 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTT 338 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || |||||||| Sbjct 339 CCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq1 Length=19836964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || ||||| || || ||||| || || ||||| || || | |||| | |||| Sbjct 10373754 AAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCTAGCGTTCGGCCATCT 10373813 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| ||||| ||||||||||| | ||||||||| || || || || ||||| || Sbjct 10373814 TCTAGTTGTTTACCAGCAAATATCAACCTCTGTTGATCAGGTGGTATTCCCTCTTTGTCC 10373873 Query 101378 TG 101379 || Sbjct 10373874 TG 10373875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271363210149