Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 1e-26
seq762 131 1e-25
seq3 105 5e-18
seq642 104 2e-17
seq1 86.0 5e-12
>seq6
Length=18523719
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || ||||| ||||| || ||||| || || ||||| || |||
Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| || | |||||||| || || || | | ||| || || || |||
Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || ||||||||||| || ||| ||| ||| | || | |||||||| | || ||
Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 17513809
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||||| || ||||| ||||||||||| ||||| || |||||
Sbjct 17513808 TCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| | ||||||||| || || || || || ||||||||||| | ||||| | | || ||
Sbjct 1438296 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTC 1438355
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||| ||||| || || || || | | ||| ||||| || ||||| ||||| ||||| ||
Sbjct 1438356 CAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTG 1438415
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || ||| || | || | |||||||| ||||||| || || |||| || ||
Sbjct 1438416 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 1438475
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || || || ||||||||
Sbjct 1438476 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | || ||| || || | |||||||| ||||| || || ||||||||||| ||
Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| || || || || || || | | |||||| || || ||
Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || || ||||| ||| || || | || | ||||| || | || ||
Sbjct 17514324 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACC 17514265
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||| | ||||| ||||| | ||||| ||||| ||||||||
Sbjct 17514264 TCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| || || ||||| ||||| || || || ||||||||||| | ||| | | | || ||
Sbjct 1443198 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTC 1443257
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||| ||||| || || || || | | || ||||| || ||||| || || || || ||
Sbjct 1443258 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTG 1443317
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || ||| || | || | |||||||| |||| || || || |||| || ||
Sbjct 1443318 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTT 1443377
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || || || ||||||||
Sbjct 1443378 CCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
Score = 86.0 bits (94), Expect = 5e-12
Identities = 122/172 (71%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||||||||| || ||||| || ||||||||||| || | || | |||| ||
Sbjct 1438004 ACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCCTCG 1438063
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || | |||||| || || || || || ||||| ||||||||
Sbjct 1438064 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTTATCTTGG 1438123
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432
|| || || || | || | ||||| || | ||||| || || ||||
Sbjct 1438124 ATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGTGTGA 1438175
>seq762
Length=4953
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| | ||||||||| || || || || || ||||||||||| | ||||| | | || ||
Sbjct 160 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTC 219
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||| ||||| || || || || | | ||| ||||| || ||||| ||||| ||||| ||
Sbjct 220 CAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTG 279
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || ||| || | || | |||||||| ||||||| || || |||| || ||
Sbjct 280 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 339
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || || || ||||||||
Sbjct 340 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
>seq3
Length=15215380
Score = 105 bits (116), Expect = 5e-18
Identities = 162/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || | | ||| | ||| | ||||| ||||| ||||| || || || ||||| |
Sbjct 11243942 TTCCACCACGGAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCG 11243883
Query 101301 CGATAGTTCTGGC-ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359
| | ||| | | ||| || | || || || ||||| || | | ||| || || ||
Sbjct 11243882 CTAAAGTCGCGACCATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGT 11243823
Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419
| |||||||||||||||||||| || || ||| | || | | ||||| ||||
Sbjct 11243822 TGGATGCCTTCTTTATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCA 11243763
Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| |||||||||| || || || || ||||| || ||||| ||||||||
Sbjct 11243762 ACCTCAAGAGTGATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713
>seq642
Length=6837
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| || || ||||| ||||| || || || ||||||||||| | ||| | | | || ||
Sbjct 159 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTC 218
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||| ||||| || || || || | | || ||||| || ||||| || || || || ||
Sbjct 219 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTG 278
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || ||| || | || | |||||||| |||| || || || |||| || ||
Sbjct 279 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTT 338
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || || || ||||||||
Sbjct 339 CCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq1
Length=19836964
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || || ||||| || || ||||| || || ||||| || || | |||| | ||||
Sbjct 10373754 AAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCTAGCGTTCGGCCATCT 10373813
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| | ||| ||||| ||||||||||| | ||||||||| || || || || ||||| ||
Sbjct 10373814 TCTAGTTGTTTACCAGCAAATATCAACCTCTGTTGATCAGGTGGTATTCCCTCTTTGTCC 10373873
Query 101378 TG 101379
||
Sbjct 10373874 TG 10373875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396271363210149
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