Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq5 84.2 2e-11
>seq6
Length=18523719
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| || || || | ||||||||| || ||| |||||| || || ||||| ||||
Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || || | |||||||||||| || || || | ||| || |||| |||
Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||| || || |||||| ||| ||| | | | || || ||| |||
Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 17513809
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || || || || |||||||| ||||| || ||||||
Sbjct 17513808 TCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCATC 17513761
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| |||||||| | || || || || || || ||||||||||| |
Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGG 48658
|| | ||| | || |||| ||| || || || || || |||| |||||| || |||||
Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| | || |||||||| ||||||| || || | | | | ||||| ||| ||
Sbjct 17514324 ATC-CCTTCCTTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAAC 17514266
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | ||||| ||||| || || | ||||| ||||||||||||||
Sbjct 17514265 CTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| ||||| ||| ||||| || |||||||| | || | ||
Sbjct 17514207 AGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGT 17514148
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667
|||| || | ||| || || ||||| || |||| ||| || || | ||||| | || ||
Sbjct 17514147 CCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATC-CCTTC 17514089
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || || | | | | ||||| ||| ||||||| ||
Sbjct 17514088 CTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGT 17514029
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| ||||| | || || ||||||||||||||
Sbjct 17514028 GATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
>seq5
Length=16150104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || || | ||||| ||| ||||| ||| || ||||| ||||| || |
Sbjct 6389283 CGCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 6389224
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || |||| |||| ||| || ||||| || || | |||||| || |||| |
Sbjct 6389223 CGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTG 6389164
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| ||||||||||| ||||| ||| ||| | | | || || | || |
Sbjct 6389163 GAATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGA 6389104
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| | || || || || ||||| | ||||| || || ||||||||
Sbjct 6389103 CCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380930835619611
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |