Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq67 111 4e-19 seq5 111 4e-19 >seq67 Length=74208 Score = 111 bits (122), Expect = 4e-19 Identities = 321/477 (67%), Gaps = 24/477 (5%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGA--AACTGAACTTGATGATCTAATTCAG 150364 || ||| || ||||||||| | |||||||| || || || | || || | | | Sbjct 68420 AGCAGGGAAGCTTGATCCAGTGATTGGTCGGGATGAAGAGATCA-GAAGAGTTG-TGAGG 68363 Query 150365 ATTCTTTCTCGTAAAACCAAAAAGAATG--GTGCGTTAGTTGGTGAACCAGGTGTTGGTA 150422 ||||| || | | ||| || || ||| |||| ||| | || |||||||| ||||| | Sbjct 68362 ATTCTATCAAGAAGAACAAAGAACAATCCAGTGC-TTA-TCGGAGAACCAGGAGTTGGAA 68305 Query 150423 AAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC--AGATTC 150480 ||||| | ||||| || ||||||||| | || | || || |||||||| | | || Sbjct 68304 AAACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCTAACAGTC 68245 Query 150481 TATGAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGT 150539 | | ||||| || ||| |||||||| | ||||||||||| |||||| |||||| Sbjct 68244 TTTCC--GATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTCGCTGGTGCTAAGT 68188 Query 150540 ATCGTGGTGAATTCGAAGAACGTGTAGACAATTTG--CTACAAGAACTAAAAGAACGCGA 150597 | || || || || |||||| | | || ||| || ||| ||||| | | ||| || Sbjct 68187 ACCGGGGAGAGTTTGAAGAAAG-ATTGA-AATCTGTTCTAAAAGAAGTTGAGGAAGCTGA 68130 Query 150598 TG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGG 150654 | | || ||||| ||||| ||||| |||||| || | ||||||||| ||| Sbjct 68129 AGGCAAAGTGATTCTCTTCATTGATGAGATCCATCTGGTTCTTGGTGCTGGTAAAACT-- 68072 Query 150655 CGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG 150714 | || || ||||| | ||| |||| || ||| || || | ||| | | || Sbjct 68071 -GAAGGGTCGATGGATGCGGCTAATCTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTACG 68013 Query 150715 TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || ||| | ||| | |||| |||||||| || Sbjct 68012 ATGCATTGGTGCTACAACACTTGAAGAGTATAGGAAATATGTTGAGAAAGATGCTGC 67956 >seq5 Length=16150104 Score = 111 bits (122), Expect = 4e-19 Identities = 321/477 (67%), Gaps = 24/477 (5%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGA--AACTGAACTTGATGATCTAATTCAG 150364 || ||| || ||||||||| | |||||||| || || || | || || | | | Sbjct 13613107 AGCAGGGAAGCTTGATCCAGTGATTGGTCGGGATGAAGAGATCA-GAAGAGTTG-TGAGG 13613050 Query 150365 ATTCTTTCTCGTAAAACCAAAAAGAATG--GTGCGTTAGTTGGTGAACCAGGTGTTGGTA 150422 ||||| || | | ||| || || ||| |||| ||| | || |||||||| ||||| | Sbjct 13613049 ATTCTATCAAGAAGAACAAAGAACAATCCAGTGC-TTA-TCGGAGAACCAGGAGTTGGAA 13612992 Query 150423 AAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC--AGATTC 150480 ||||| | ||||| || ||||||||| | || | || || |||||||| | | || Sbjct 13612991 AAACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCTAACAGTC 13612932 Query 150481 TATGAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGT 150539 | | ||||| || ||| |||||||| | ||||||||||| |||||| |||||| Sbjct 13612931 TTTCC--GATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTCGCTGGTGCTAAGT 13612875 Query 150540 ATCGTGGTGAATTCGAAGAACGTGTAGACAATTTG--CTACAAGAACTAAAAGAACGCGA 150597 | || || || || |||||| | | || ||| || ||| ||||| | | ||| || Sbjct 13612874 ACCGGGGAGAGTTTGAAGAAAG-ATTGA-AATCTGTTCTAAAAGAAGTTGAGGAAGCTGA 13612817 Query 150598 TG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGG 150654 | | || ||||| ||||| ||||| |||||| || | ||||||||| ||| Sbjct 13612816 AGGCAAAGTGATTCTCTTCATTGATGAGATCCATCTGGTTCTTGGTGCTGGTAAAACT-- 13612759 Query 150655 CGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG 150714 | || || ||||| | ||| |||| || ||| || || | ||| | | || Sbjct 13612758 -GAAGGGTCGATGGATGCGGCTAATCTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTACG 13612700 Query 150715 TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || ||| | ||| | |||| |||||||| || Sbjct 13612699 ATGCATTGGTGCTACAACACTTGAAGAGTATAGGAAATATGTTGAGAAAGATGCTGC 13612643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147568976997586