Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq113 134 2e-26
seq2 134 2e-26
seq5 104 3e-17
seq1 86.0 8e-12
>seq113
Length=54118
Score = 134 bits (148), Expect = 2e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680
||||||| | || ||||| ||||||||||||| ||||| || |||||||||| |||
Sbjct 24498 TCTTCTTTGTGGGTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACA 24557
Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740
|||||||| |||| || |||||||| | ||| ||| ||| ||||| || | |||
Sbjct 24558 AACCCTTCACCAATCTGGTCATCATCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCA 24617
Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800
| ||||| ||||| ||||| || || | ||| ||||| |||||||| |||||
Sbjct 24618 GCTACAACTTTACCGGCACAGCTCGAGCAAGAACCAGCACGGCAAGAGTAAGGCAAATCG 24677
Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832
| ||| ||||||| || || || |||| |||
Sbjct 24678 ATCCCTGCTTCCTCCGCCGCGTCGAGGACGTA 24709
>seq2
Length=13294645
Score = 134 bits (148), Expect = 2e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680
||||||| | || ||||| ||||||||||||| ||||| || |||||||||| |||
Sbjct 3079690 TCTTCTTTGTGGGTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACA 3079631
Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740
|||||||| |||| || |||||||| | ||| ||| ||| ||||| || | |||
Sbjct 3079630 AACCCTTCACCAATCTGGTCATCATCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCA 3079571
Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800
| ||||| ||||| ||||| || || | ||| ||||| |||||||| |||||
Sbjct 3079570 GCTACAACTTTACCGGCACAGCTCGAGCAAGAACCAGCACGGCAAGAGTAAGGCAAATCG 3079511
Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832
| ||| ||||||| || || || |||| |||
Sbjct 3079510 ATCCCTGCTTCCTCCGCCGCGTCGAGGACGTA 3079479
>seq5
Length=16150104
Score = 104 bits (114), Expect = 3e-17
Identities = 229/341 (67%), Gaps = 3/341 (1%)
Strand=Plus/Minus
Query 23552 AAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAG 23611
|||| |||| ||||| || |||| ||| || | | | |||| || | | || |
Sbjct 10049607 AAAACCATAGGCACGTAGGTTAAAAGCTAGAAGACTACT-CCAAGAGCACTCATACACAT 10049549
Query 23612 ACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAAC 23671
| | || ||| | ||||| |||||||| || | ||| || ||||| |||||||||
Sbjct 10049548 ATCAATTACAAGTACAAATAACATAAATAAAT--AACTGACTTCTATTGGAAAACGCAAC 10049491
Query 23672 CCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTG 23731
||| || |||||||| |||| | ||||| || | ||| ||||| || || || | ||
Sbjct 10049490 CCCAAATATTTGTGATAAAAAGCAGTTTGCGGTGAACATTGAATAAGTTTCTTCGACTTG 10049431
Query 23732 AGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTC 23791
| | | || || || | || || ||||| | |||| || ||| | || |
Sbjct 10049430 ATTTGTATTAAAAGCATCTAATGTATTTGCACCATTACCATTTTTATATAAAAGATATTT 10049371
Query 23792 GACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCAT 23851
||| || | |||||||||| | |||| || | ||||||||||| || |||| |||
Sbjct 10049370 TACAATAGCACCATGAATAGTGCATAGAAAAGCAGCGCCCAGTATACCGGCGACTCTCAT 10049311
Query 23852 CATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGA 23892
||||| || ||||| | |||| || | ||| | ||||
Sbjct 10049310 CATATAAAATGGGTTCAATATCCAATTTTAAAACACTTGGA 10049270
>seq1
Length=19836964
Score = 86.0 bits (94), Expect = 8e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680
||||||| | |||||||| | ||||||||||| || || || ||||| ||||| |||
Sbjct 3425224 TCTTCTTTGTGGGTTTCAATGACGACATCAGAAGTCGGGTAAGCCACACAGGTGAGGACA 3425165
Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740
| || || | || || ||||| || ||||| ||| || ||||| | | |||
Sbjct 3425164 TAGCCGTCATTCATCTGGTCATCGTCTAAGAAGCTCTGGTCCGACTGGTCAATGGATCCA 3425105
Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800
|| || | ||||| || || || || | || ||||| |||||||| |||||
Sbjct 3425104 GAGACGACTTTACCGGCGCAGCTAGAGCAAGATCCGGCACGGCAAGAGTAAGGCAAATCG 3425045
Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832
| || ||||||| || || || |||| |||
Sbjct 3425044 ATACCGGCTTCCTCCGCAGCGTCGAGGACGTA 3425013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665482279683240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |