Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq113 134 2e-26 seq2 134 2e-26 seq5 104 3e-17 seq1 86.0 8e-12 >seq113 Length=54118 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | || ||||| ||||||||||||| ||||| || |||||||||| ||| Sbjct 24498 TCTTCTTTGTGGGTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACA 24557 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 |||||||| |||| || |||||||| | ||| ||| ||| ||||| || | ||| Sbjct 24558 AACCCTTCACCAATCTGGTCATCATCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCA 24617 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 | ||||| ||||| ||||| || || | ||| ||||| |||||||| ||||| Sbjct 24618 GCTACAACTTTACCGGCACAGCTCGAGCAAGAACCAGCACGGCAAGAGTAAGGCAAATCG 24677 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| ||||||| || || || |||| ||| Sbjct 24678 ATCCCTGCTTCCTCCGCCGCGTCGAGGACGTA 24709 >seq2 Length=13294645 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | || ||||| ||||||||||||| ||||| || |||||||||| ||| Sbjct 3079690 TCTTCTTTGTGGGTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACA 3079631 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 |||||||| |||| || |||||||| | ||| ||| ||| ||||| || | ||| Sbjct 3079630 AACCCTTCACCAATCTGGTCATCATCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCA 3079571 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 | ||||| ||||| ||||| || || | ||| ||||| |||||||| ||||| Sbjct 3079570 GCTACAACTTTACCGGCACAGCTCGAGCAAGAACCAGCACGGCAAGAGTAAGGCAAATCG 3079511 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| ||||||| || || || |||| ||| Sbjct 3079510 ATCCCTGCTTCCTCCGCCGCGTCGAGGACGTA 3079479 >seq5 Length=16150104 Score = 104 bits (114), Expect = 3e-17 Identities = 229/341 (67%), Gaps = 3/341 (1%) Strand=Plus/Minus Query 23552 AAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAG 23611 |||| |||| ||||| || |||| ||| || | | | |||| || | | || | Sbjct 10049607 AAAACCATAGGCACGTAGGTTAAAAGCTAGAAGACTACT-CCAAGAGCACTCATACACAT 10049549 Query 23612 ACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAAC 23671 | | || ||| | ||||| |||||||| || | ||| || ||||| ||||||||| Sbjct 10049548 ATCAATTACAAGTACAAATAACATAAATAAAT--AACTGACTTCTATTGGAAAACGCAAC 10049491 Query 23672 CCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTG 23731 ||| || |||||||| |||| | ||||| || | ||| ||||| || || || | || Sbjct 10049490 CCCAAATATTTGTGATAAAAAGCAGTTTGCGGTGAACATTGAATAAGTTTCTTCGACTTG 10049431 Query 23732 AGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTC 23791 | | | || || || | || || ||||| | |||| || ||| | || | Sbjct 10049430 ATTTGTATTAAAAGCATCTAATGTATTTGCACCATTACCATTTTTATATAAAAGATATTT 10049371 Query 23792 GACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCAT 23851 ||| || | |||||||||| | |||| || | ||||||||||| || |||| ||| Sbjct 10049370 TACAATAGCACCATGAATAGTGCATAGAAAAGCAGCGCCCAGTATACCGGCGACTCTCAT 10049311 Query 23852 CATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGA 23892 ||||| || ||||| | |||| || | ||| | |||| Sbjct 10049310 CATATAAAATGGGTTCAATATCCAATTTTAAAACACTTGGA 10049270 >seq1 Length=19836964 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | |||||||| | ||||||||||| || || || ||||| ||||| ||| Sbjct 3425224 TCTTCTTTGTGGGTTTCAATGACGACATCAGAAGTCGGGTAAGCCACACAGGTGAGGACA 3425165 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | || || | || || ||||| || ||||| ||| || ||||| | | ||| Sbjct 3425164 TAGCCGTCATTCATCTGGTCATCGTCTAAGAAGCTCTGGTCCGACTGGTCAATGGATCCA 3425105 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || | ||||| || || || || | || ||||| |||||||| ||||| Sbjct 3425104 GAGACGACTTTACCGGCGCAGCTAGAGCAAGATCCGGCACGGCAAGAGTAAGGCAAATCG 3425045 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || ||||||| || || || |||| ||| Sbjct 3425044 ATACCGGCTTCCTCCGCAGCGTCGAGGACGTA 3425013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665482279683240