Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq5 129 7e-25 seq7 120 4e-22 seq4 120 4e-22 seq2 89.7 6e-13 >seq1 Length=19836964 Score = 136 bits (150), Expect = 5e-27 Identities = 301/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | | | ||||||| |||||| ||| Sbjct 1802080 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACCGCAGTTGGTGCCCGGATCCCTAAAGGT 1802021 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 1802020 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGT 1801961 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||||| | | ||||| ||||||||||| | Sbjct 1801960 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCTGGGTCTGAGTTTGTTGAGATGTTTGTCG 1801903 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| |||||| || ||||| || ||| ||| |||||| || || | Sbjct 1801902 GTGTTGGTGCCTCAAGGGTCCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCTTGCA 1801843 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || | ||||| || ||||| || || | |||| | | |||| |||| Sbjct 1801842 TTGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 1801786 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || | ||||| || || || ||||||||||| |||| Sbjct 1801785 GAGGTAATGATGAAAGAGAACAGACCCTAAATCAGCTCCTGACGGAGATGGATGGTTTTG 1801726 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | ||||| ||||| | Sbjct 1801725 AGGGTAATACTGGTGTTATTGTAGTTGCTGCAACCAACAGGGCAGATATTCTTGACTCTG 1801666 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | || | || || |||||||| || Sbjct 1801665 CCTTGCTGAGACCAGGGCGTTTTGACCG 1801638 >seq5 Length=16150104 Score = 129 bits (142), Expect = 7e-25 Identities = 197/279 (71%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||||||| | ||| |||| | || || ||| || || || || Sbjct 10841470 GCCCGGTACGGGTAAGACCCTCTTGGCCAGAGCGGTGGCTGGAGAAGCAGGAGTACCGTT 10841411 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | || | | ||||||||| | ||||| ||||||||||| || || Sbjct 10841410 CTTCTCCTGCGCGGCTTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGCGTCTAGAGT 10841351 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | | ||||| || || | || | || || || ||||| |||||||||||||| Sbjct 10841350 TAGAGATCTTTTCGAGAAGGCTAAGGCTAAAGCTCCTTGCATTGTTTTCATTGATGAGAT 10841291 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||| || ||||| | ||| | | ||||| ||| | | || |||||| |||||||| Sbjct 10841290 TGACGCTGTGGGAAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGAG 10841233 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| | | || ||||||||||| ||| Sbjct 10841232 CAGACGATTAATCAGTTGTTGACTGAGATGGATGGATTT 10841194 Score = 100 bits (110), Expect = 3e-16 Identities = 275/418 (66%), Gaps = 25/418 (6%) Strand=Plus/Plus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 |||| ||||| | ||||| ||||| ||| | || || ||||| || || || | || Sbjct 2661671 TCAAGAAACTCCTCCACAGTGTGTGATTCCTCTGTTGCCACAACGTAATCGTCTGGCTTC 2661730 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || | ||| |||||||| || ||||| || ||| || ||||| ||||| Sbjct 2661731 TCTTGCTGCAACATCAGCCACATTGCCTCAACGTAATCCCCTGCGAATCCCCAATCTCTT 2661790 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-------CACCTTTCACAATTTG 177731 | || | || || || || | || || |||| |||||| || | Sbjct 2661791 GACGCCTGCAGATTCCCAAGG---AAGAGCTTCCTCTGCAAACCCACCTTG----ATCCG 2661843 Query 177732 TTTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTG 177791 | | | | || |||||| | || || |||| | || || | ||||| ||||| Sbjct 2661844 TCCCAGGGCTCTTGTTATCTTCCTGGTCACGAAGTTCTCTCCACGACGAGGTGACTCGTG 2661903 Query 177792 GTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC--- 177848 |||||| ||||||||| ||||| | | ||| |||| |||||||||| ||||| Sbjct 2661904 GTTGAACAGGATTCCGTTACAGGCGAAAAGACCGTAGGCTTCTCGGTAA---TTGACAGT 2661960 Query 177849 GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTC 177908 | ||| ||||| || ||||||| | | ||| |||| || | || || ||| Sbjct 2661961 GTACCAATGAGCAGCGCATTTGGATGCTGCGTAGGGAGATCTGGGATGAAACGGCGTCGT 2662020 Query 177909 CTCAGTTTGTGGAGTTTCTCGGACTT-TACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| | |||||| | |||| || || ||||||||||||| | ||||||||| Sbjct 2662021 CTCCGATTGTGG----TGGCGGAGTTGCTCCGAACATCTCCGAAGATCCGGCTTGGTA 2662074 >seq7 Length=17055980 Score = 120 bits (132), Expect = 4e-22 Identities = 197/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| || | || |||| | || || ||| || || |||||| Sbjct 4202267 CCTGGAACAGGGAAGACGCTTTTGGCTAGAGCGGTGGCTGGAGAAGCAGGAGTGCCATTC 4202326 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| | ||||||||||| ||||| |||||| Sbjct 4202327 TTCTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTTGGTGCGTCTAGGGTT 4202386 Query 175435 CGCGATCTCTTT--GAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||| ||| || |||||| || |||||||| || || ||||||| Sbjct 4202387 AGGGATTTGTTTGAGAAGGCGAAAGCGAAA--GCTCCTTGTATTGTTTTTATAGATGAGA 4202444 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | |||| | | ||||| ||| | | || ||||| |||||||| Sbjct 4202445 TTGATGCTGTTGGTAGGCAAAGAGGAGCTGGTATGGGAGG--AGGGAATGATGAGAGAGA 4202502 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| || | || ||||||||||| ||| Sbjct 4202503 GCAGACGATTAATCAGCTTTTGACGGAGATGGATGGTTTT 4202542 >seq4 Length=14320061 Score = 120 bits (132), Expect = 4e-22 Identities = 275/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| | |||||||||| || ||||||| |||||| ||| Sbjct 12447489 GTCGAGTTTCTGAAGAAGCCCGAGAGATTCACTGCCGTTGGTGCCCGGATCCCTAAAGGT 12447430 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || || || | || ||| || || ||| Sbjct 12447429 GTTCTACTTATTGGTCCTCCTGGTACCGGGAAAACGCTTTTGGCAAAAGCTATTGCTGGT 12447370 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || | || | | | ||||| ||||||||||||||| Sbjct 12447369 GAAGCTGGTGTGCCTTTCTTCTCGATTTCCGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 12447310 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || |||||||| || | | ||| ||||| || || ||| Sbjct 12447309 GTTGGTGCCTCAAGAGTCCGCGATCTATTCAAGAAAGCCAAGGAAAACGCTCCTTGCATT 12447250 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| |||||||| || || | |||| | | | || |||| | Sbjct 12447249 GTCTTTGTAGATGAAATTGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 12447193 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 12447192 GGTAATGATGAAAGAGAACAGACTCTCAATCAGCTCCTAACTGAGATGGATGGATTTGAA 12447133 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | || || ||| | || |||| || || ||| | | || || ||||| Sbjct 12447132 GGTAACACCGGTATTATCGTAGTTGCTGCGACCAATAGAGCAGACATTCTTGA 12447080 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA---TCTTCAA 75184 || || | ||| | || ||||||||| | ||||| ||||||| || || |||| || Sbjct 320612 CGTGATTTTGAATATGATTACTTTGGATTTAAAACACTTGAGA-GATCTTACCTCTTGAA 320670 Query 75185 CGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGC 75244 | || | || | | | |||| || || ||||| | ||| |||| || | ||| Sbjct 320671 AG--TCCACGGGAAAGTTGTCGAAAGGCCTCAACACATGCTGATGAGGGTTGCTGTTGGC 320728 Query 75245 ATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG 75304 |||||| | | || |||| |||||| | |||||||| | |||||| || | | Sbjct 320729 ATCCACAAGAATGATATTGCTTCTGTGATCAAGACATACCATTTGATGTCGCAGAGATGG 320788 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||| ||| | || || ||||||||||| || || ||||| || || Sbjct 320789 TTCACTCATGCATCTCCTACTCTCTTCAATGCAGGAACTCCAAGGCCTCA 320838 >seq2 Length=13294645 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGC 65082 ||||| || | ||||| ||||| ||| | || | |||| | || |||||| | Sbjct 9186524 AAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGA---TCTCAGACTTTTGCCGAGAGA 9186580 Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTAT 65142 | | || || || ||||| || ||||||||||||||||| |||||| | |||| Sbjct 9186581 ATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTC 9186640 Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202 ||| |||| ||||| ||||||||||| || || |||||| || || | || || ||| Sbjct 9186641 TGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAGTTGATCTCACGA 9186700 Query 65203 GATGAGGG 65210 || || || Sbjct 9186701 GACGAAGG 9186708 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/186 (70%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 177781 GGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAA 177840 ||||| ||||||||||| |||||||| |||||| |||| ||||| | ||||||||| Sbjct 3820509 GGTGACTCGTGGTTGAACAGGATTCCATTGCAGGCGTACAGTCCATATGCCTCTCGGTAA 3820568 Query 177841 TTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAG 177900 || | | ||||||||| || |||||||| | ||||| || | || | || Sbjct 3820569 TTGACGGTGTACCAGTGAGCTGCGCATTTGGAGGCAGCATAGGGAGACCTCGGATGAAAC 3820628 Query 177901 GGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGC 177959 || || ||||| ||| |||| ||| || | || ||||||||||| | | ||| Sbjct 3820629 GGCGTGGTCTCAGATTGCGGAG----GAGGAGTTGACCCGAACATCTCCGAGGATCCGGC 3820684 Query 177960 TTGGTA 177965 ||||| Sbjct 3820685 CTGGTA 3820690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596558734976160