Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 5e-27
seq5 129 7e-25
seq7 120 4e-22
seq4 120 4e-22
seq2 89.7 6e-13
>seq1
Length=19836964
Score = 136 bits (150), Expect = 5e-27
Identities = 301/448 (67%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| | || ||||| | | | ||||||| |||||| |||
Sbjct 1802080 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACCGCAGTTGGTGCCCGGATCCCTAAAGGT 1802021
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || | ||| || ||||| || || ||||| | || |||||| || |||
Sbjct 1802020 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGT 1801961
Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414
||| | ||| || ||| | ||| ||||| | | ||||| ||||||||||| |
Sbjct 1801960 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCTGGGTCTGAGTTTGTTGAGATGTTTGTCG 1801903
Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474
|||| |||||| |||||| || ||||| || ||| ||| |||||| || || |
Sbjct 1801902 GTGTTGGTGCCTCAAGGGTCCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCTTGCA 1801843
Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531
|||| || | ||||| || ||||| || || | |||| | | |||| ||||
Sbjct 1801842 TTGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 1801786
Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591
|| ||||| || |||||||| || | ||||| || || || ||||||||||| ||||
Sbjct 1801785 GAGGTAATGATGAAAGAGAACAGACCCTAAATCAGCTCCTGACGGAGATGGATGGTTTTG 1801726
Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651
| | | ||||| || | || |||| || || || | | ||||| ||||| |
Sbjct 1801725 AGGGTAATACTGGTGTTATTGTAGTTGCTGCAACCAACAGGGCAGATATTCTTGACTCTG 1801666
Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679
|| | || | || || |||||||| ||
Sbjct 1801665 CCTTGCTGAGACCAGGGCGTTTTGACCG 1801638
>seq5
Length=16150104
Score = 129 bits (142), Expect = 7e-25
Identities = 197/279 (71%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373
||| |||||||| ||||||||| | ||| |||| | || || ||| || || || ||
Sbjct 10841470 GCCCGGTACGGGTAAGACCCTCTTGGCCAGAGCGGTGGCTGGAGAAGCAGGAGTACCGTT 10841411
Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
| || ||| | || | | ||||||||| | ||||| ||||||||||| || ||
Sbjct 10841410 CTTCTCCTGCGCGGCTTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGCGTCTAGAGT 10841351
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
| | ||||| || || | || | || || || ||||| ||||||||||||||
Sbjct 10841350 TAGAGATCTTTTCGAGAAGGCTAAGGCTAAAGCTCCTTGCATTGTTTTCATTGATGAGAT 10841291
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551
||| || ||||| | ||| | | ||||| ||| | | || |||||| ||||||||
Sbjct 10841290 TGACGCTGTGGGAAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGAG 10841233
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
|| || |||||||| | | || ||||||||||| |||
Sbjct 10841232 CAGACGATTAATCAGTTGTTGACTGAGATGGATGGATTT 10841194
Score = 100 bits (110), Expect = 3e-16
Identities = 275/418 (66%), Gaps = 25/418 (6%)
Strand=Plus/Plus
Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618
|||| ||||| | ||||| ||||| ||| | || || ||||| || || || | ||
Sbjct 2661671 TCAAGAAACTCCTCCACAGTGTGTGATTCCTCTGTTGCCACAACGTAATCGTCTGGCTTC 2661730
Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678
||||| || | ||| |||||||| || ||||| || ||| || ||||| |||||
Sbjct 2661731 TCTTGCTGCAACATCAGCCACATTGCCTCAACGTAATCCCCTGCGAATCCCCAATCTCTT 2661790
Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-------CACCTTTCACAATTTG 177731
| || | || || || || | || || |||| |||||| || |
Sbjct 2661791 GACGCCTGCAGATTCCCAAGG---AAGAGCTTCCTCTGCAAACCCACCTTG----ATCCG 2661843
Query 177732 TTTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTG 177791
| | | | || |||||| | || || |||| | || || | ||||| |||||
Sbjct 2661844 TCCCAGGGCTCTTGTTATCTTCCTGGTCACGAAGTTCTCTCCACGACGAGGTGACTCGTG 2661903
Query 177792 GTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC--- 177848
|||||| ||||||||| ||||| | | ||| |||| |||||||||| |||||
Sbjct 2661904 GTTGAACAGGATTCCGTTACAGGCGAAAAGACCGTAGGCTTCTCGGTAA---TTGACAGT 2661960
Query 177849 GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTC 177908
| ||| ||||| || ||||||| | | ||| |||| || | || || |||
Sbjct 2661961 GTACCAATGAGCAGCGCATTTGGATGCTGCGTAGGGAGATCTGGGATGAAACGGCGTCGT 2662020
Query 177909 CTCAGTTTGTGGAGTTTCTCGGACTT-TACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965
||| | |||||| | |||| || || ||||||||||||| | |||||||||
Sbjct 2662021 CTCCGATTGTGG----TGGCGGAGTTGCTCCGAACATCTCCGAAGATCCGGCTTGGTA 2662074
>seq7
Length=17055980
Score = 120 bits (132), Expect = 4e-22
Identities = 197/280 (70%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || || ||||| || | || |||| | || || ||| || || ||||||
Sbjct 4202267 CCTGGAACAGGGAAGACGCTTTTGGCTAGAGCGGTGGCTGGAGAAGCAGGAGTGCCATTC 4202326
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| |||| | | ||||||||| | ||||||||||| ||||| ||||||
Sbjct 4202327 TTCTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTTGGTGCGTCTAGGGTT 4202386
Query 175435 CGCGATCTCTTT--GAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492
| ||| | ||| ||| || |||||| || |||||||| || || |||||||
Sbjct 4202387 AGGGATTTGTTTGAGAAGGCGAAAGCGAAA--GCTCCTTGTATTGTTTTTATAGATGAGA 4202444
Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550
||||||| || || | |||| | | ||||| ||| | | || ||||| ||||||||
Sbjct 4202445 TTGATGCTGTTGGTAGGCAAAGAGGAGCTGGTATGGGAGG--AGGGAATGATGAGAGAGA 4202502
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
|| || |||||||| || | || ||||||||||| |||
Sbjct 4202503 GCAGACGATTAATCAGCTTTTGACGGAGATGGATGGTTTT 4202542
>seq4
Length=14320061
Score = 120 bits (132), Expect = 4e-22
Identities = 275/413 (67%), Gaps = 6/413 (1%)
Strand=Plus/Minus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
|| || ||||| ||| | |||||||||| || ||||||| |||||| |||
Sbjct 12447489 GTCGAGTTTCTGAAGAAGCCCGAGAGATTCACTGCCGTTGGTGCCCGGATCCCTAAAGGT 12447430
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || ||| || ||||| || || || || | || ||| || || |||
Sbjct 12447429 GTTCTACTTATTGGTCCTCCTGGTACCGGGAAAACGCTTTTGGCAAAAGCTATTGCTGGT 12447370
Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416
||| | ||| || ||| || | || | | | ||||| |||||||||||||||
Sbjct 12447369 GAAGCTGGTGTGCCTTTCTTCTCGATTTCCGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 12447310
Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476
|| |||||| ||| || |||||||| || | | ||| ||||| || || |||
Sbjct 12447309 GTTGGTGCCTCAAGAGTCCGCGATCTATTCAAGAAAGCCAAGGAAAACGCTCCTTGCATT 12447250
Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533
||||| | ||||| |||||||| || || | |||| | | | || |||| |
Sbjct 12447249 GTCTTTGTAGATGAAATTGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 12447193
Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593
| ||||| || |||||||| || | ||||| || || || ||||||||||| |||||
Sbjct 12447192 GGTAATGATGAAAGAGAACAGACTCTCAATCAGCTCCTAACTGAGATGGATGGATTTGAA 12447133
Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
| | || || ||| | || |||| || || ||| | | || || |||||
Sbjct 12447132 GGTAACACCGGTATTATCGTAGTTGCTGCGACCAATAGAGCAGACATTCTTGA 12447080
Score = 82.4 bits (90), Expect = 9e-11
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA---TCTTCAA 75184
|| || | ||| | || ||||||||| | ||||| ||||||| || || |||| ||
Sbjct 320612 CGTGATTTTGAATATGATTACTTTGGATTTAAAACACTTGAGA-GATCTTACCTCTTGAA 320670
Query 75185 CGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGC 75244
| || | || | | | |||| || || ||||| | ||| |||| || | |||
Sbjct 320671 AG--TCCACGGGAAAGTTGTCGAAAGGCCTCAACACATGCTGATGAGGGTTGCTGTTGGC 320728
Query 75245 ATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG 75304
|||||| | | || |||| |||||| | |||||||| | |||||| || | |
Sbjct 320729 ATCCACAAGAATGATATTGCTTCTGTGATCAAGACATACCATTTGATGTCGCAGAGATGG 320788
Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|||| ||| ||| | || || ||||||||||| || || ||||| || ||
Sbjct 320789 TTCACTCATGCATCTCCTACTCTCTTCAATGCAGGAACTCCAAGGCCTCA 320838
>seq2
Length=13294645
Score = 89.7 bits (98), Expect = 6e-13
Identities = 133/188 (71%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGC 65082
||||| || | ||||| ||||| ||| | || | |||| | || |||||| |
Sbjct 9186524 AAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGA---TCTCAGACTTTTGCCGAGAGA 9186580
Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTAT 65142
| | || || || ||||| || ||||||||||||||||| |||||| | ||||
Sbjct 9186581 ATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTC 9186640
Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202
||| |||| ||||| ||||||||||| || || |||||| || || | || || |||
Sbjct 9186641 TGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAGTTGATCTCACGA 9186700
Query 65203 GATGAGGG 65210
|| || ||
Sbjct 9186701 GACGAAGG 9186708
Score = 84.2 bits (92), Expect = 3e-11
Identities = 131/186 (70%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 177781 GGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAA 177840
||||| ||||||||||| |||||||| |||||| |||| ||||| | |||||||||
Sbjct 3820509 GGTGACTCGTGGTTGAACAGGATTCCATTGCAGGCGTACAGTCCATATGCCTCTCGGTAA 3820568
Query 177841 TTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAG 177900
|| | | ||||||||| || |||||||| | ||||| || | || | ||
Sbjct 3820569 TTGACGGTGTACCAGTGAGCTGCGCATTTGGAGGCAGCATAGGGAGACCTCGGATGAAAC 3820628
Query 177901 GGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGC 177959
|| || ||||| ||| |||| ||| || | || ||||||||||| | | |||
Sbjct 3820629 GGCGTGGTCTCAGATTGCGGAG----GAGGAGTTGACCCGAACATCTCCGAGGATCCGGC 3820684
Query 177960 TTGGTA 177965
|||||
Sbjct 3820685 CTGGTA 3820690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596558734976160
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