Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6 109 1e-18 seq3 102 1e-16 >seq6 Length=18523719 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| | ||||| |||| ||| | || | |||||| || || ||||| Sbjct 17513991 ATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 17513932 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| |||| || || ||||| || || | ||||| || || ||| Sbjct 17513931 GCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| || || | ||| | ||| || || || || ||| Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCG 17513812 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||||| ||||| ||||| |||||||| Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 >seq3 Length=15215380 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || || || || ||||||| ||| || || | || ||||| || ||||| || Sbjct 11243630 TGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTGAATC 11243571 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || || |||| ||| || ||| || ||| ||||||||| || || || ||||| || Sbjct 11243570 TTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTTGCCA 11243511 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| |||||||||||||| Sbjct 11243510 GTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 89.7 bits (98), Expect = 9e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTT-CTAGA 193204 || || || || || | |||| |||||| ||| ||||| || | ||| || | | Sbjct 11243928 CGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACC 11243869 Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | || || |||||||| |||| ||||| || || || | || |||||||| Sbjct 11243868 ATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTT 11243809 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||| || | ||| ||| |||| || ||||| || ||||| || Sbjct 11243808 ATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGAT 11243749 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | || || ||||| || ||||| Sbjct 11243748 GGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899638015044240