Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 1e-18
seq3 102 1e-16
>seq6
Length=18523719
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| ||||| | ||||| |||| ||| | || | |||||| || || |||||
Sbjct 17513991 ATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 17513932
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | | ||| |||| || || ||||| || || | ||||| || || |||
Sbjct 17513931 GCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| ||||||||||| || || | ||| | ||| || || || || |||
Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCG 17513812
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || ||||||| ||||| ||||| ||||||||
Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
>seq3
Length=15215380
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || || || || ||||||| ||| || || | || ||||| || ||||| ||
Sbjct 11243630 TGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTGAATC 11243571
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| || |||| ||| || ||| || ||| ||||||||| || || || ||||| ||
Sbjct 11243570 TTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTTGCCA 11243511
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||||||||||||
Sbjct 11243510 GTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 89.7 bits (98), Expect = 9e-13
Identities = 150/216 (69%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTT-CTAGA 193204
|| || || || || | |||| |||||| ||| ||||| || | ||| || | |
Sbjct 11243928 CGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACC 11243869
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | || || |||||||| |||| ||||| || || || | || ||||||||
Sbjct 11243868 ATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTT 11243809
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|||||| || |||| || | ||| ||| |||| || ||||| || ||||| ||
Sbjct 11243808 ATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGAT 11243749
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || | || || ||||| || |||||
Sbjct 11243748 GGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899638015044240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |