Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-17 seq6 86.0 1e-11 seq1 84.2 4e-11 >seq3 Length=15215380 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||||||||| || || ||||||| |||||| || | || ||||| || ||||| || Sbjct 11243630 TGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTGAATC 11243571 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || | ||||||||| | ||| ||||| || ||||| || ||||||||||| ||| Sbjct 11243570 TTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTTGCCA 11243511 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||| | ||||| ||||| Sbjct 11243510 GTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGAT-CGTTCGTCATCCAATTGTTTAC 171930 ||||| |||||| ||| |||||||| | ||||| || | || || | || || | Sbjct 11243911 AGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACCATCTTCGAGCTGATTCC 11243852 Query 171931 CAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTT 171990 | ||||| |||| ||||| ||||| ||| | || |||||||||||||| || || | Sbjct 11243851 CGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTTATCTTGAATCTTGGCCT 11243792 Query 171991 TTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG 172050 | |||||| || |||| || ||| || || ||||| ||||| ||||| || || | Sbjct 11243791 TCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGATGGTCTTACCCGTCAAAG 11243732 Query 172051 TTTTAATGAATATCTGCAT 172069 | || | || |||||||| Sbjct 11243731 TCTTGACAAAGATCTGCAT 11243713 >seq6 Length=18523719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||| ||||| || || | |||||||||||| ||||| || ||||| || Sbjct 17514372 TCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTG 17514313 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || || ||| || || ||||| || || || ||||||||| Sbjct 17514312 TCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAATG 17514253 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || | ||||| | || |||||||| Sbjct 17514252 GTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 >seq1 Length=19836964 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | ||||| || || | || || || || | ||| | |||||| || || | Sbjct 10373731 TCATGGTCCCACCCCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGT 10373790 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | || | || | ||| | || || | ||||||||||||||| || || |||||||| | Sbjct 10373791 AGTCCGCTAGCGTTCGGCCATCTTCTAGTTGTTTACCAGCAAATATCAACCTCTGTTGAT 10373850 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||||||||||| ||||| || ||| Sbjct 10373851 CAGGTGGTATTCCCTCTTTGTCCTGT 10373876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905119515210600