Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 1e-17
seq6 86.0 1e-11
seq1 84.2 4e-11
>seq3
Length=15215380
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
||||||||||| || || ||||||| |||||| || | || ||||| || ||||| ||
Sbjct 11243630 TGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTGAATC 11243571
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
|| | ||||||||| | ||| ||||| || ||||| || ||||||||||| |||
Sbjct 11243570 TTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTTGCCA 11243511
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | |||||| | ||||| |||||
Sbjct 11243510 GTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 98.7 bits (108), Expect = 2e-15
Identities = 142/199 (71%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGAT-CGTTCGTCATCCAATTGTTTAC 171930
||||| |||||| ||| |||||||| | ||||| || | || || | || || |
Sbjct 11243911 AGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACCATCTTCGAGCTGATTCC 11243852
Query 171931 CAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTT 171990
| ||||| |||| ||||| ||||| ||| | || |||||||||||||| || || |
Sbjct 11243851 CGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTTATCTTGAATCTTGGCCT 11243792
Query 171991 TTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG 172050
| |||||| || |||| || ||| || || ||||| ||||| ||||| || || |
Sbjct 11243791 TCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGATGGTCTTACCCGTCAAAG 11243732
Query 172051 TTTTAATGAATATCTGCAT 172069
| || | || ||||||||
Sbjct 11243731 TCTTGACAAAGATCTGCAT 11243713
>seq6
Length=18523719
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| |||| ||||| ||||| || || | |||||||||||| ||||| || ||||| ||
Sbjct 17514372 TCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTG 17514313
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || || || || || ||| || || ||||| || || || |||||||||
Sbjct 17514312 TCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAATG 17514253
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || || | ||||| | || ||||||||
Sbjct 17514252 GTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
>seq1
Length=19836964
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
|||| | ||||| || || | || || || || | ||| | |||||| || || |
Sbjct 10373731 TCATGGTCCCACCCCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGT 10373790
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
| || | || | ||| | || || | ||||||||||||||| || || |||||||| |
Sbjct 10373791 AGTCCGCTAGCGTTCGGCCATCTTCTAGTTGTTTACCAGCAAATATCAACCTCTGTTGAT 10373850
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980
||||||||||||| ||||| || |||
Sbjct 10373851 CAGGTGGTATTCCCTCTTTGTCCTGT 10373876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905119515210600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |