Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 131 5e-25 seq4 96.9 1e-14 >seq7 Length=17055980 Score = 131 bits (144), Expect = 5e-25 Identities = 285/419 (68%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || || |||||||| || Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTC---CC 4202486 Query 288999 TCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAA 289055 || | ||| | | |||||| ||| |||||||||||||||| || || || || Sbjct 4202485 TCCT------CCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAA 4202432 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | ||| |||| || | |||| | |||| || || || || | || || || Sbjct 4202431 AACAATACAAGGAGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACC 4202372 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGG-ATACTTGAATGAATGTTACATTTG 289174 || ||||||| | | || ||||| || ||||| | | || ||| ||||| || || Sbjct 4202371 AACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAA-GAATGGCACTCCTG 4202313 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || || || || |||| ||| ||||| |||||||||||||| || | |||| Sbjct 4202312 CTTCTCCAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGGTGGACCAACCAATA 4202253 Query 289235 GAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||| |||||| |||| || || || || | || || || || |||| || || Sbjct 4202252 -AACACCCTTTAGGTATCTTAGCTCCTAAAGCTGTGTACTTATCTGGATTCTTCAAGAAA 4202194 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | ||| | | ||| || || | |||| |||||| ||||| |||| || Sbjct 4202193 TCAACCACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCTGCAACATCCCCAAATGT 4202135 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| ||| | |||||| || |||||||| ||||||||||||||||| |||| |||| Sbjct 10135266 TTCAAAAAGTTAGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 10135325 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| || | |||| ||| ||| | ||||| | ||||| Sbjct 10135326 AGACCACCATCACGGGATCGCCCCTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 10135385 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417 | |||| | | ||| || || | ||||||||||||| Sbjct 10135386 CGTCCACGGGAGTGAATCTTGTCATCGACCATATGCTTCA 10135425 Score = 84.2 bits (92), Expect = 6e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCG-TCATATA 251461 |||||| || ||||| | | ||||||||| || || || ||||| | | | ||| | | Sbjct 10135199 GGCGATGAGCCCACAGGTTTCACACACATGTACCCTATACGCATC-GCTCTGATCAAACA 10135257 Query 251462 GCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 ||| | || ||| || ||||| |||| |||||| |||||||| |||||||| | Sbjct 10135258 GCCTCTCTTTCAAAAAGTTAGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTC 10135317 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 | ||||| ||||||||||| || | | ||||| || || || Sbjct 10135318 CAAAACGCAGACCACCATCACGGGATCGCCCCTCAGCTGGTTG 10135360 >seq4 Length=14320061 Score = 96.9 bits (106), Expect = 1e-14 Identities = 310/472 (66%), Gaps = 22/472 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCA 288945 || || ||||| || || || || | ||| | |||| |||| | ||| ||||||| Sbjct 12447086 ATGTCTGCTCTATTGGTCGCAGCAACTACGATAATAC---CGGTGTTACCTTCAAATCCA 12447142 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| |||| | ||||| || || ||||| ||||||||||| ||||| Sbjct 12447143 TCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATT---ACCTC----- 12447194 Query 289006 TCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 || || | || | |||| ||| ||||||||||||||||||| || | || | | Sbjct 12447195 -CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAAT 12447252 Query 289062 ACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACC 289121 || |||| |||| | || | |||| || | || | || || |||| ||| Sbjct 12447253 GCAAGGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACC 12447312 Query 289122 AACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGC 289180 |||| |||| || ||||| |||||| |||| | | || | ||| | ||| ||||| | Sbjct 12447313 AACAAACATCTCAACAAACTCAGAACCGGA-AATCGAGAAGAAAGGCACACCAGCTTCAC 12447371 Query 289181 CTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC 289240 | || | || | |||| ||| || || || || ||||| || || | |||||| | Sbjct 12447372 CAGCAATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACAC 12447431 Query 289241 CCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 | || || | || ||| | | | || |||| || |||| | ||| || || | Sbjct 12447432 CTTTAGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGACGA 12447491 Query 289301 TTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 12447492 CTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 12447543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471790124385009