Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq7 131 5e-25
seq4 96.9 1e-14
>seq7
Length=17055980
Score = 131 bits (144), Expect = 5e-25
Identities = 285/419 (68%), Gaps = 16/419 (4%)
Strand=Plus/Minus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
||| |||||||| || |||| ||||||| || || || || |||||||| ||
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTC---CC 4202486
Query 288999 TCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAA 289055
|| | ||| | | |||||| ||| |||||||||||||||| || || || ||
Sbjct 4202485 TCCT------CCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAA 4202432
Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115
|| | ||| |||| || | |||| | |||| || || || || | || || ||
Sbjct 4202431 AACAATACAAGGAGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACC 4202372
Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGG-ATACTTGAATGAATGTTACATTTG 289174
|| ||||||| | | || ||||| || ||||| | | || ||| ||||| || ||
Sbjct 4202371 AACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAA-GAATGGCACTCCTG 4202313
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
|||| || || || || || |||| ||| ||||| |||||||||||||| || | ||||
Sbjct 4202312 CTTCTCCAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGGTGGACCAACCAATA 4202253
Query 289235 GAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293
||| |||||| |||| || || || || | || || || || |||| || ||
Sbjct 4202252 -AACACCCTTTAGGTATCTTAGCTCCTAAAGCTGTGTACTTATCTGGATTCTTCAAGAAA 4202194
Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|| || | ||| | | ||| || || | |||| |||||| ||||| |||| ||
Sbjct 4202193 TCAACCACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCTGCAACATCCCCAAATGT 4202135
Score = 87.8 bits (96), Expect = 5e-12
Identities = 116/160 (73%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317
|| |||| ||| | |||||| || |||||||| ||||||||||||||||| |||| ||||
Sbjct 10135266 TTCAAAAAGTTAGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 10135325
Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377
|||||||||||| || | |||| ||| ||| | ||||| | |||||
Sbjct 10135326 AGACCACCATCACGGGATCGCCCCTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 10135385
Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417
| |||| | | ||| || || | |||||||||||||
Sbjct 10135386 CGTCCACGGGAGTGAATCTTGTCATCGACCATATGCTTCA 10135425
Score = 84.2 bits (92), Expect = 6e-11
Identities = 118/163 (72%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCG-TCATATA 251461
|||||| || ||||| | | ||||||||| || || || ||||| | | | ||| | |
Sbjct 10135199 GGCGATGAGCCCACAGGTTTCACACACATGTACCCTATACGCATC-GCTCTGATCAAACA 10135257
Query 251462 GCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521
||| | || ||| || ||||| |||| |||||| |||||||| |||||||| |
Sbjct 10135258 GCCTCTCTTTCAAAAAGTTAGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTC 10135317
Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564
| ||||| ||||||||||| || | | ||||| || || ||
Sbjct 10135318 CAAAACGCAGACCACCATCACGGGATCGCCCCTCAGCTGGTTG 10135360
>seq4
Length=14320061
Score = 96.9 bits (106), Expect = 1e-14
Identities = 310/472 (66%), Gaps = 22/472 (5%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCA 288945
|| || ||||| || || || || | ||| | |||| |||| | ||| |||||||
Sbjct 12447086 ATGTCTGCTCTATTGGTCGCAGCAACTACGATAATAC---CGGTGTTACCTTCAAATCCA 12447142
Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005
||||| |||| | ||||| || || ||||| ||||||||||| |||||
Sbjct 12447143 TCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATT---ACCTC----- 12447194
Query 289006 TCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061
|| || | || | |||| ||| ||||||||||||||||||| || | || | |
Sbjct 12447195 -CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAAT 12447252
Query 289062 ACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACC 289121
|| |||| |||| | || | |||| || | || | || || |||| |||
Sbjct 12447253 GCAAGGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACC 12447312
Query 289122 AACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGC 289180
|||| |||| || ||||| |||||| |||| | | || | ||| | ||| ||||| |
Sbjct 12447313 AACAAACATCTCAACAAACTCAGAACCGGA-AATCGAGAAGAAAGGCACACCAGCTTCAC 12447371
Query 289181 CTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC 289240
| || | || | |||| ||| || || || || ||||| || || | |||||| |
Sbjct 12447372 CAGCAATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACAC 12447431
Query 289241 CCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300
| || || | || ||| | | | || |||| || |||| | ||| || || |
Sbjct 12447432 CTTTAGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGACGA 12447491
Query 289301 TTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|||| | || | ||||| |||||| ||| || |||||| |||| ||
Sbjct 12447492 CTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 12447543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471790124385009
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |