Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 3e-29
>seq2
Length=13294645
Score = 147 bits (162), Expect = 3e-29
Identities = 216/298 (72%), Gaps = 7/298 (2%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| |||||||| || ||||||||||| ||||| || || | | |||| | |||||
Sbjct 9186429 GAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGC 9186370
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || ||| || ||| || || ||||| ||||| ||||| |||||||||
Sbjct 9186369 ACATCGGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAG 9186310
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810
|| || || ||||| ||||| ||||| || ||| ||||| | || | |||||| ||
Sbjct 9186309 AAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTCGCGA 9186250
Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870
| || | ||| || || || || ||||| ||||||| || || |||||||| ||||
Sbjct 9186249 CCGTCT-TGCG-AAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTTGT 9186192
Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926
|||||||||| | || |||| |||| ||||| | ||| || | || ||||||||
Sbjct 9186191 ACATCTCCCAGATCTGTGGGTATTGGATCGGGAACA-TACAGAATCTGTCTGGGGTTG 9186135
Score = 140 bits (154), Expect = 4e-27
Identities = 226/320 (71%), Gaps = 4/320 (1%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || | | |||||| ||||| || || |||| ||||||||
Sbjct 9187023 GCCTTTTGGTAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATT 9186964
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
||||||||||| ||||| || | | ||| ||| || | ||||||| | |
Sbjct 9186963 AACTCCATCCAATCAAACGGATTAGCCACACCGTACACCTTACCGTACCCGAGCGCCCCC 9186904
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| || | || || |||||||| |||||||| | ||| ||| | |||||| || |
Sbjct 9186903 AAAAGCCTATCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACC 9186844
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
| ||| |||||||| |||| ||||||||| |||||||||||||||| ||| || |
Sbjct 9186843 AACGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACG 9186784
Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTT-GTTGACGAGCATCGTGTAGAGCAGGCAGG 868988
|| || || | || || | ||| |||| || || || | |||||||| |||||| |
Sbjct 9186783 AT-TGACTTCACGCGCTCCTCGGAGAGCTTCGTCCACAAG-AGCGTGTAGATCAGGCACG 9186726
Query 868989 CAAAGTCGCAGTGCAACCCT 869008
| || ||||| || || |||
Sbjct 9186725 CGAAATCGCAATGTAAGCCT 9186706
Score = 122 bits (134), Expect = 1e-21
Identities = 191/272 (70%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||| || ||||| |||||| |||| | ||||||||||| || |||||
Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|| ||||| || || | |||||| || || ||||| ||||| || ||||| ||| ||
Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359
||| || | ||||||||| || | ||| || | ||||||||||||||||||
Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCT-GAGATCC-----ATCGATCCACTTCATCGCCCAC 9186535
Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419
| ||| || || || | || | || ||||| ||||| ||||| ||||| | ||
Sbjct 9186534 TGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAGAGATGGTCTCTCTCT 9186475
Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
|||||||| || ||||||| |||||
Sbjct 9186474 TTGTTGTCCTTGATGTAAGTGTCGAGGAGGAG 9186443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107019631756869
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |