Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-29 >seq2 Length=13294645 Score = 147 bits (162), Expect = 3e-29 Identities = 216/298 (72%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || ||||||||||| ||||| || || | | |||| | ||||| Sbjct 9186429 GAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGC 9186370 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||| || ||| || || ||||| ||||| ||||| ||||||||| Sbjct 9186369 ACATCGGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAG 9186310 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810 || || || ||||| ||||| ||||| || ||| ||||| | || | |||||| || Sbjct 9186309 AAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTCGCGA 9186250 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | || | ||| || || || || ||||| ||||||| || || |||||||| |||| Sbjct 9186249 CCGTCT-TGCG-AAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTTGT 9186192 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||| | || |||| |||| ||||| | ||| || | || |||||||| Sbjct 9186191 ACATCTCCCAGATCTGTGGGTATTGGATCGGGAACA-TACAGAATCTGTCTGGGGTTG 9186135 Score = 140 bits (154), Expect = 4e-27 Identities = 226/320 (71%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || | | |||||| ||||| || || |||| |||||||| Sbjct 9187023 GCCTTTTGGTAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATT 9186964 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| ||||| || | | ||| ||| || | ||||||| | | Sbjct 9186963 AACTCCATCCAATCAAACGGATTAGCCACACCGTACACCTTACCGTACCCGAGCGCCCCC 9186904 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || |||||||| |||||||| | ||| ||| | |||||| || | Sbjct 9186903 AAAAGCCTATCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACC 9186844 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| |||||||| |||| ||||||||| |||||||||||||||| ||| || | Sbjct 9186843 AACGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACG 9186784 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTT-GTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 || || || | || || | ||| |||| || || || | |||||||| |||||| | Sbjct 9186783 AT-TGACTTCACGCGCTCCTCGGAGAGCTTCGTCCACAAG-AGCGTGTAGATCAGGCACG 9186726 Query 868989 CAAAGTCGCAGTGCAACCCT 869008 | || ||||| || || ||| Sbjct 9186725 CGAAATCGCAATGTAAGCCT 9186706 Score = 122 bits (134), Expect = 1e-21 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| |||| | ||||||||||| || ||||| Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || || | |||||| || || ||||| ||||| || ||||| ||| || Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || | ||||||||| || | ||| || | |||||||||||||||||| Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCT-GAGATCC-----ATCGATCCACTTCATCGCCCAC 9186535 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | ||| || || || | || | || ||||| ||||| ||||| ||||| | || Sbjct 9186534 TGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAGAGATGGTCTCTCTCT 9186475 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| || ||||||| ||||| Sbjct 9186474 TTGTTGTCCTTGATGTAAGTGTCGAGGAGGAG 9186443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107019631756869