Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 seq6 125 6e-24 seq1 125 6e-24 seq642 122 8e-23 seq4 122 8e-23 seq5 116 3e-21 seq762 105 6e-18 >seq3 Length=15215380 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | ||||| || || || ||||| ||||| |||||||| || | Sbjct 11243484 GATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTC 11243543 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || || | ||||| |||||| |||||||| ||||| || | || || || Sbjct 11243544 AGACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCA 11243603 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | | | || ||||| || || |||||||| |||||| | | | | ||||||| || Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| ||||||||||| ||||| ||| | |||||||| Sbjct 11243664 CATCCAAAAGGAATCAACACTTCACCTTGTGTTGCG 11243699 Score = 114 bits (126), Expect = 1e-20 Identities = 160/218 (73%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| |||| || || || || || || || || || || || ||| | Sbjct 11192759 GATGCA-ATCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTC 11192701 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || ||| || || || |||||||||||| |||||||| | ||| || | Sbjct 11192700 AGACACCATTGACAACATCAAGACCAA-GATCCAAGACAAGGAAGGAATCCTTCCGGAAC 11192642 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTAT 24880 | || | | ||||||||||| |||||||| |||||| | | | | || | ||||| Sbjct 11192641 AGCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTG-CGGATTAC 11192583 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||||||||| ||||| || | |||||||| Sbjct 11192582 AACATCCAAAAGGAATCAACACTTCATCTTGTGTTGCG 11192545 >seq6 Length=18523719 Score = 125 bits (138), Expect = 6e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || ||||| ||||| ||||| || || || || | | Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||| || ||||| ||||| || || || || ||| Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | ||||| || |||||||||||||||||| ||| | || || | ||||| | Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCG-CACACTTG-CGGATTACA 17514395 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 | || || |||||||| || || ||| | |||||||| Sbjct 17514396 ATATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCG 17514432 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || ||||| || ||||| || ||||| || ||| | | Sbjct 1443408 GATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTC 1443349 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| |||| | |||||||| ||||| || || || ||||| |||| Sbjct 1443348 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 1443290 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | ||| | | ||||| ||||| || ||| |||| || | | || | ||||| | Sbjct 1443289 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 1443230 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || |||||||| || || |||||||| Sbjct 1443229 ACATCCAGAAGGAATCCACCCTCCACTTGGT 1443199 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || ||| | | Sbjct 1438506 GATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTC 1438447 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| |||| | |||||||| || || ||||| || ||||| |||| Sbjct 1438446 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 1438388 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | | ||||| ||||| || ||| ||||||| ||| || | ||||| | Sbjct 1438387 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 1438328 Query 24882 ACATTCAAAAGGAATCGACACTACA 24906 |||| || ||||| ||||| || || Sbjct 1438327 ACATCCAGAAGGAGTCGACCCTTCA 1438303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | ||||| |||| || || || || || ||||| || || | | Sbjct 17513761 GATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTC 17513820 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||| ||||| ||||| ||||| || || Sbjct 17513821 TGACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCA 17513880 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 || | | ||||| ||||| || ||||| || ||| ||| | || | | || || Sbjct 17513881 GCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCG-CACAC-TCGCTGACTAC 17513938 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || || || || || || || |||||| Sbjct 17513939 AACATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || || || |||||||| | || || || | | Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || ||||| ||||| || ||||| || ||| Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 17514565 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || ||||||||||| |||||| | | || | || || || Sbjct 17514566 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAAT 17514625 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || |||||||| Sbjct 17514626 ATCCAGAAGGAGTCGACTCTTCACTTGGT 17514654 >seq1 Length=19836964 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| ||||| || || || || || || || || || | || Sbjct 7691995 ATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCGTCC 7692054 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 7692055 GACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAG 7692114 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || |||||||| |||||||| || ||| | | | ||||| ||| Sbjct 7692115 CAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTACAAC 7692174 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || || | ||||| Sbjct 7692175 ATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGG 7692221 >seq642 Length=6837 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || ||||| || ||||| || ||||| || ||| | | Sbjct 369 GATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTC 310 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| |||| | |||||||| ||||| || || || ||||| |||| Sbjct 309 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 251 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | ||| | | ||||| ||||| || ||| |||| || | | || | ||||| | Sbjct 250 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 191 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || |||||||| || || |||||||| Sbjct 190 ACATCCAGAAGGAATCCACCCTCCACTTGGT 160 >seq4 Length=14320061 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || ||||| ||||| || || || | Sbjct 6306336 GATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTCGAGGTCGAGTCCTC 6306277 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| |||||||| ||||| || || Sbjct 6306276 CGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 6306217 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || ||||| || ||||| ||||| | | | | | || || || Sbjct 6306216 GCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAA 6306157 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||||||||| || ||| Sbjct 6306156 CATCCAGAAGGAATCGACCCTTCAC 6306132 >seq5 Length=16150104 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| || || || || || || || || ||| || || Sbjct 6389055 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCCTCC 6389114 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| || ||||| || || || || Sbjct 6389115 GACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAG 6389174 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || || || ||||||||||||||||| || | | | | || || ||| Sbjct 6389175 CAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTACAAC 6389234 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| ||||| ||||| || || ||||| | || | || || |||| Sbjct 6389235 ATTCAGAAGGAGTCGACGCTGCATCTGGTGCTCCGTCTCCGTGGTGGCG 6389283 >seq762 Length=4953 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || ||| | | Sbjct 370 GATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTC 311 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| |||| | |||||||| || || ||||| || ||||| |||| Sbjct 310 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 252 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | | ||||| ||||| || ||| ||||||| ||| || | ||||| | Sbjct 251 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 192 Query 24882 ACATTCAAAAGGAATCGACACTACA 24906 |||| || ||||| ||||| || || Sbjct 191 ACATCCAGAAGGAGTCGACCCTTCA 167 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||||||||||| || || || || ||||| || || | Sbjct 141 ATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACGATCACCCTCGAGGTCGAGAGTTCT 82 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || || || Sbjct 81 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAG 22 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || | |||||||||||||| Sbjct 21 CAGAGGTTGATCTTTGCCGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889406239960