Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 4e-26
seq6 125 6e-24
seq1 125 6e-24
seq642 122 8e-23
seq4 122 8e-23
seq5 116 3e-21
seq762 105 6e-18
>seq3
Length=15215380
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| || ||| | ||||| || || || ||||| ||||| |||||||| || |
Sbjct 11243484 GATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTC 11243543
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| || || | ||||| |||||| |||||||| ||||| || | || || ||
Sbjct 11243544 AGACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCA 11243603
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
| | | || ||||| || || |||||||| |||||| | | | | ||||||| ||
Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||| ||||||||||| ||||| ||| | ||||||||
Sbjct 11243664 CATCCAAAAGGAATCAACACTTCACCTTGTGTTGCG 11243699
Score = 114 bits (126), Expect = 1e-20
Identities = 160/218 (73%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| |||||| |||| || || || || || || || || || || || ||| |
Sbjct 11192759 GATGCA-ATCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTC 11192701
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||||| | || ||| || || || |||||||||||| |||||||| | ||| || |
Sbjct 11192700 AGACACCATTGACAACATCAAGACCAA-GATCCAAGACAAGGAAGGAATCCTTCCGGAAC 11192642
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTAT 24880
| || | | ||||||||||| |||||||| |||||| | | | | || | |||||
Sbjct 11192641 AGCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTG-CGGATTAC 11192583
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||||| ||||||||||| ||||| || | ||||||||
Sbjct 11192582 AACATCCAAAAGGAATCAACACTTCATCTTGTGTTGCG 11192545
>seq6
Length=18523719
Score = 125 bits (138), Expect = 6e-24
Identities = 160/217 (74%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || ||||| ||||| ||||| || || || || | |
Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || |||||| || ||||| ||||| || || || || |||
Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| | | ||||| || |||||||||||||||||| ||| | || || | ||||| |
Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCG-CACACTTG-CGGATTACA 17514395
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
| || || |||||||| || || ||| | ||||||||
Sbjct 17514396 ATATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCG 17514432
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| |||| || || ||||| || ||||| || ||||| || ||| | |
Sbjct 1443408 GATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTC 1443349
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||||| | || |||| |||| | |||||||| ||||| || || || ||||| ||||
Sbjct 1443348 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 1443290
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| ||| | | ||||| ||||| || ||| |||| || | | || | ||||| |
Sbjct 1443289 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 1443230
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912
|||| || |||||||| || || ||||||||
Sbjct 1443229 ACATCCAGAAGGAATCCACCCTCCACTTGGT 1443199
Score = 105 bits (116), Expect = 6e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || ||||| || || || || ||||| || ||| | |
Sbjct 1438506 GATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTC 1438447
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||||| | || |||| |||| | |||||||| || || ||||| || ||||| ||||
Sbjct 1438446 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 1438388
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| || | | ||||| ||||| || ||| ||||||| ||| || | ||||| |
Sbjct 1438387 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 1438328
Query 24882 ACATTCAAAAGGAATCGACACTACA 24906
|||| || ||||| ||||| || ||
Sbjct 1438327 ACATCCAGAAGGAGTCGACCCTTCA 1438303
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/213 (71%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| |||||| | ||||| |||| || || || || || ||||| || || | |
Sbjct 17513761 GATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTC 17513820
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || ||| |||||||||||| ||||| ||||| ||||| || ||
Sbjct 17513821 TGACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCA 17513880
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880
|| | | ||||| ||||| || ||||| || ||| ||| | || | | || ||
Sbjct 17513881 GCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCG-CACAC-TCGCTGACTAC 17513938
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913
||||| || || || || || || || ||||||
Sbjct 17513939 AACATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | || || | || || || |||||||| | || || || | |
Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || ||||| || ||||| ||||| || ||||| || |||
Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 17514565
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | ||||| || ||||||||||| |||||| | | || | || || ||
Sbjct 17514566 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAAT 17514625
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| ||||| || ||||||||
Sbjct 17514626 ATCCAGAAGGAGTCGACTCTTCACTTGGT 17514654
>seq1
Length=19836964
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | ||||| ||||| || || || || || || || || || | ||
Sbjct 7691995 ATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCGTCC 7692054
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| ||||| || || || |||||
Sbjct 7692055 GACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAG 7692114
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| |||| || |||||||| |||||||| || ||| | | | ||||| |||
Sbjct 7692115 CAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTACAAC 7692174
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || |||||||| | || || | |||||
Sbjct 7692175 ATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGG 7692221
>seq642
Length=6837
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| |||| || || ||||| || ||||| || ||||| || ||| | |
Sbjct 369 GATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTC 310
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||||| | || |||| |||| | |||||||| ||||| || || || ||||| ||||
Sbjct 309 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 251
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| ||| | | ||||| ||||| || ||| |||| || | | || | ||||| |
Sbjct 250 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 191
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912
|||| || |||||||| || || ||||||||
Sbjct 190 ACATCCAGAAGGAATCCACCCTCCACTTGGT 160
>seq4
Length=14320061
Score = 122 bits (134), Expect = 8e-23
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | ||||| ||||| || || || ||||| ||||| || || || |
Sbjct 6306336 GATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTCGAGGTCGAGTCCTC 6306277
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||| ||||| |||||||| ||||| || ||
Sbjct 6306276 CGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 6306217
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || ||||| || ||||| || ||||| ||||| | | | | | || || ||
Sbjct 6306216 GCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAA 6306157
Query 24883 CATTCAAAAGGAATCGACACTACAC 24907
||| || ||||||||||| || |||
Sbjct 6306156 CATCCAGAAGGAATCGACCCTTCAC 6306132
>seq5
Length=16150104
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| ||||| || || || || || || || || ||| || ||
Sbjct 6389055 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCCTCC 6389114
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| |||||||| ||||| || ||||| || || || ||
Sbjct 6389115 GACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAG 6389174
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || || || || ||||||||||||||||| || | | | | || || |||
Sbjct 6389175 CAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTACAAC 6389234
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
||||| ||||| ||||| || || ||||| | || | || || ||||
Sbjct 6389235 ATTCAGAAGGAGTCGACGCTGCATCTGGTGCTCCGTCTCCGTGGTGGCG 6389283
>seq762
Length=4953
Score = 105 bits (116), Expect = 6e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || ||||| || || || || ||||| || ||| | |
Sbjct 370 GATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTC 311
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||||| | || |||| |||| | |||||||| || || ||||| || ||||| ||||
Sbjct 310 TGACACCATCGACAACGTTAAAGC-CAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 252
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| || | | ||||| ||||| || ||| ||||||| ||| || | ||||| |
Sbjct 251 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 192
Query 24882 ACATTCAAAAGGAATCGACACTACA 24906
|||| || ||||| ||||| || ||
Sbjct 191 ACATCCAGAAGGAGTCGACCCTTCA 167
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | |||||||||||||| || || || || ||||| || || |
Sbjct 141 ATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACGATCACCCTCGAGGTCGAGAGTTCT 82
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || ||||| || || || ||
Sbjct 81 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAG 22
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| | ||||||||||||||
Sbjct 21 CAGAGGTTGATCTTTGCCGG 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449889406239960
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