Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq1 93.3 3e-14 seq762 91.5 1e-13 seq6 91.5 1e-13 seq4 91.5 1e-13 >seq3 Length=15215380 Score = 113 bits (124), Expect = 4e-20 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| ||||| | || ||||||||||||||| ||||| ||| | Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 110333 GATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGG---CGTGCCCGTGGA 110388 || ||||| | | ||||| ||| |||||| ||||| ||||| || ||| ||| Sbjct 11243545 GACACTGTTGATAATGTAAAGACA-AAGATTCAAGACAAGGAAGGGATCGCGCC---GGA 11243600 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| | ||| | || | || ||||||||||| ||||||| | || | || ||||| Sbjct 11243601 CCAATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTA 11243660 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||| ||||| ||||| || | ||| | ||||| Sbjct 11243661 CAACATCCAAAAGGAATCAACACTTCACCTTGTGTT 11243696 >seq1 Length=19836964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| |||| || || || || ||| | || ||| | Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| ||||| | || |||| Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAT 7692111 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || |||| || || || |||||||| || | || ||| | ||||||||| Sbjct 7692112 CAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTAC 7692171 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| || || || || ||| | ||| |||| | | ||| |||| ||| Sbjct 7692172 AACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGGA 7692222 >seq762 Length=4953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | ||||| || || ||||| ||| | |||||||| ||||| ||| |||| ||| Sbjct 376 ATTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGA 317 Query 110326 --GC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 || ||||| || ||| | | || ||| ||||| || || ||||| | || Sbjct 316 AAGCTCTGAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCC 260 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 |||||| || |||||||| | || || || ||| ||||||| | | |||| |||| Sbjct 259 TCCGGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGC 200 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 ||||||||||| || || || || || Sbjct 199 CGATTACAACATCCAGAAGGAGTCGAC 173 >seq6 Length=18523719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | ||||| || || ||||| ||| | |||||||| ||||| ||| |||| ||| Sbjct 1438512 ATTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGA 1438453 Query 110326 --GC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 || ||||| || ||| | | || ||| ||||| || || ||||| | || Sbjct 1438452 AAGCTCTGAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCC 1438396 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 |||||| || |||||||| | || || || ||| ||||||| | | |||| |||| Sbjct 1438395 TCCGGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGC 1438336 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 ||||||||||| || || || || || Sbjct 1438335 CGATTACAACATCCAGAAGGAGTCGAC 1438309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGA-AACG-GAGC-CT 110329 |||||||| ||||| ||||||||||| ||||| ||||| || |||| || |||| || Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| || ||||| || | || ||| Sbjct 17513822 GAC---ACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGAC 17513878 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||| | || ||||| ||||| || |||| | ||| | || || ||| Sbjct 17513879 CAGCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTAC 17513938 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || || | || ||||| Sbjct 17513939 AACATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971 >seq4 Length=14320061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 110367 ACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGG 110426 |||||||||| | || ||||||||||| || || | ||| ||||| || || || | Sbjct 10684939 ACAAAGAAGGTATACCACCAGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAAG 10684880 Query 110427 ATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAA 110486 ||| | |||| | |||||||||||||| || ||||| ||||| | ||| |||| || | Sbjct 10684879 ATGGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTGGTCTTGA 10684820 Query 110487 GACTGCGAGGGGGAA 110501 | || |||| |||| Sbjct 10684819 GGCTTAGAGGTGGAA 10684805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834269094301