Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq3 113 4e-20
seq1 93.3 3e-14
seq762 91.5 1e-13
seq6 91.5 1e-13
seq4 91.5 1e-13
>seq3
Length=15215380
Score = 113 bits (124), Expect = 4e-20
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||||||||| ||||| | || ||||||||||||||| ||||| ||| |
Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544
Query 110333 GATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGG---CGTGCCCGTGGA 110388
|| ||||| | | ||||| ||| |||||| ||||| ||||| || ||| |||
Sbjct 11243545 GACACTGTTGATAATGTAAAGACA-AAGATTCAAGACAAGGAAGGGATCGCGCC---GGA 11243600
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| | ||| | || | || ||||||||||| ||||||| | || | || |||||
Sbjct 11243601 CCAATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTA 11243660
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||| ||||| ||||| || | ||| | |||||
Sbjct 11243661 CAACATCCAAAAGGAATCAACACTTCACCTTGTGTT 11243696
>seq1
Length=19836964
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
||||||||||| ||||| ||||| |||| || || || || ||| | || ||| |
Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || || |||||| ||||| ||||| | || ||||
Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAT 7692111
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || |||| || || || |||||||| || | || ||| | |||||||||
Sbjct 7692112 CAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTAC 7692171
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500
||||| || || || || ||| | ||| |||| | | ||| |||| |||
Sbjct 7692172 AACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGGA 7692222
>seq762
Length=4953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325
|||| | ||||| || || ||||| ||| | |||||||| ||||| ||| |||| |||
Sbjct 376 ATTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGA 317
Query 110326 --GC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382
|| ||||| || ||| | | || ||| ||||| || || ||||| | ||
Sbjct 316 AAGCTCTGAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCC 260
Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442
|||||| || |||||||| | || || || ||| ||||||| | | |||| ||||
Sbjct 259 TCCGGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGC 200
Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469
||||||||||| || || || || ||
Sbjct 199 CGATTACAACATCCAGAAGGAGTCGAC 173
>seq6
Length=18523719
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325
|||| | ||||| || || ||||| ||| | |||||||| ||||| ||| |||| |||
Sbjct 1438512 ATTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGA 1438453
Query 110326 --GC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382
|| ||||| || ||| | | || ||| ||||| || || ||||| | ||
Sbjct 1438452 AAGCTCTGAC---ACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCC 1438396
Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442
|||||| || |||||||| | || || || ||| ||||||| | | |||| ||||
Sbjct 1438395 TCCGGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGC 1438336
Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469
||||||||||| || || || || ||
Sbjct 1438335 CGATTACAACATCCAGAAGGAGTCGAC 1438309
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGA-AACG-GAGC-CT 110329
|||||||| ||||| ||||||||||| ||||| ||||| || |||| || |||| ||
Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || ||| ||||| || ||||| || | || |||
Sbjct 17513822 GAC---ACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGAC 17513878
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || ||||| | || ||||| ||||| || |||| | ||| | || || |||
Sbjct 17513879 CAGCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTAC 17513938
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || ||||| || || | || |||||
Sbjct 17513939 AACATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971
>seq4
Length=14320061
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 110367 ACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGG 110426
|||||||||| | || ||||||||||| || || | ||| ||||| || || || |
Sbjct 10684939 ACAAAGAAGGTATACCACCAGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAAG 10684880
Query 110427 ATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAA 110486
||| | |||| | |||||||||||||| || ||||| ||||| | ||| |||| || |
Sbjct 10684879 ATGGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTGGTCTTGA 10684820
Query 110487 GACTGCGAGGGGGAA 110501
| || |||| ||||
Sbjct 10684819 GGCTTAGAGGTGGAA 10684805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412834269094301
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |