Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 9e-37
>seq2
Length=13294645
Score = 172 bits (190), Expect = 9e-37
Identities = 235/327 (72%), Gaps = 7/327 (2%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| || |||||| |||||| ||| | ||||||||||| || |||||
Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| ||||| || || | ||||| || || ||||| ||||| || ||||| ||| ||
Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
|||||| | |||||||||||| | || || |||||||||||||||||||
Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGATCCATC------GATCCACTTCATCGCCCAC 9186535
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
| || || || || | || | || ||||| ||||| ||||| ||||| ||||
Sbjct 9186534 TGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAGAGATGGTCTCTCTCT 9186475
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
|||||||| ||| ||||||| |||||| ||| |||| ||||| ||||| ||
Sbjct 9186474 TTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAGTGTATGTTCTCA 9186415
Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666
|| ||||||||||| || || ||||||
Sbjct 9186414 ATCGCGATCTGGAAACCGTAGAAAGCA 9186388
Score = 140 bits (154), Expect = 5e-27
Identities = 220/307 (72%), Gaps = 10/307 (3%)
Strand=Plus/Minus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| ||||| || | | |||||| ||||| || || |||| |||||||| |||||||||
Sbjct 9187014 TAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATTAACTCCATC 9186955
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027
|| ||||| || ||| ||| ||| || ||||||||| | | | || |
Sbjct 9186954 CAATCAAACGGATTAGCCACACCGTACACCTTACCGTACCCGAGCGCCCCCAAAAGCCTA 9186895
Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086
|| || || || ||||||||||| | ||| ||| | |||||| || | | ||| |||
Sbjct 9186894 TCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACCAACGCGCAC 9186835
Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT---CTG 794143
|| ||||| |||| |||||||| |||||||||||||||| ||| || ||| ||
Sbjct 9186834 GG-CAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATTGACTT 9186776
Query 794144 CCTGGGCACGTCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202
| | || | ||||| || |||| ||| || || | |||||||| |||||| || || |
Sbjct 9186775 CACGCGCTCCTCGGA-GA--GCTTCGTCCACAAG-AGCGTGTAGATCAGGCACGCGAAAT 9186720
Query 794203 CGCAATG 794209
|||||||
Sbjct 9186719 CGCAATG 9186713
Score = 132 bits (146), Expect = 8e-25
Identities = 170/231 (74%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| | ||||| || || ||| || ||| || || ||||| ||||| |||
Sbjct 9186384 GCCTCCGAGACTTGCACATCGGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCG 9186325
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| ||||||||| |||||||| ||||| ||||| ||||| || ||| ||||| | ||
Sbjct 9186324 TCTGAGGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGA 9186265
Query 796270 GAGACCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327
|||||| | ||||| | | || || ||||| || ||||| ||||| || || |
Sbjct 9186264 TTCTCCCAGTCGCGACCGTCTTG-CGAA-AGATCGACTTCTTCGGCCGTCCAGAAAGATG 9186207
Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
| |||||||| |||||||||||||| ||| || |||| |||| |||||||
Sbjct 9186206 CTTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACA 9186156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916091412264623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |