Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 172 9e-37 >seq2 Length=13294645 Score = 172 bits (190), Expect = 9e-37 Identities = 235/327 (72%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||| |||||| ||| | ||||||||||| || ||||| Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || || | ||||| || || ||||| ||||| || ||||| ||| || Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| | |||||||||||| | || || ||||||||||||||||||| Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGATCCATC------GATCCACTTCATCGCCCAC 9186535 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || || || | || | || ||||| ||||| ||||| ||||| |||| Sbjct 9186534 TGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAGAGATGGTCTCTCTCT 9186475 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| ||||||| |||||| ||| |||| ||||| ||||| || Sbjct 9186474 TTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAGTGTATGTTCTCA 9186415 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 9186414 ATCGCGATCTGGAAACCGTAGAAAGCA 9186388 Score = 140 bits (154), Expect = 5e-27 Identities = 220/307 (72%), Gaps = 10/307 (3%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||||| || | | |||||| ||||| || || |||| |||||||| ||||||||| Sbjct 9187014 TAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATTAACTCCATC 9186955 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||||| || ||| ||| ||| || ||||||||| | | | || | Sbjct 9186954 CAATCAAACGGATTAGCCACACCGTACACCTTACCGTACCCGAGCGCCCCCAAAAGCCTA 9186895 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086 || || || || ||||||||||| | ||| ||| | |||||| || | | ||| ||| Sbjct 9186894 TCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACCAACGCGCAC 9186835 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT---CTG 794143 || ||||| |||| |||||||| |||||||||||||||| ||| || ||| || Sbjct 9186834 GG-CAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATTGACTT 9186776 Query 794144 CCTGGGCACGTCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 | | || | ||||| || |||| ||| || || | |||||||| |||||| || || | Sbjct 9186775 CACGCGCTCCTCGGA-GA--GCTTCGTCCACAAG-AGCGTGTAGATCAGGCACGCGAAAT 9186720 Query 794203 CGCAATG 794209 ||||||| Sbjct 9186719 CGCAATG 9186713 Score = 132 bits (146), Expect = 8e-25 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| || || ||| || ||| || || ||||| ||||| ||| Sbjct 9186384 GCCTCCGAGACTTGCACATCGGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCG 9186325 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| ||||| ||||| ||||| || ||| ||||| | || Sbjct 9186324 TCTGAGGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGA 9186265 Query 796270 GAGACCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||||| | ||||| | | || || ||||| || ||||| ||||| || || | Sbjct 9186264 TTCTCCCAGTCGCGACCGTCTTG-CGAA-AGATCGACTTCTTCGGCCGTCCAGAAAGATG 9186207 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | |||||||| |||||||||||||| ||| || |||| |||| ||||||| Sbjct 9186206 CTTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACA 9186156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916091412264623