Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 8e-21
seq4 113 3e-20
seq6 93.3 3e-14
seq642 91.5 1e-13
seq762 87.8 1e-12
>seq5
Length=16150104
Score = 114 bits (126), Expect = 8e-21
Identities = 145/197 (74%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| ||||| | || | || | || ||||| || || ||||||||
Sbjct 6389246 CTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAA 6389187
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|| | ||| |||||||| | || | ||||||||||| | || || |||||| |
Sbjct 6389186 AATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGAC--A 6389129
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
| | ||||| || || ||||| |||| |||||||||||| ||||| ||||| |
Sbjct 6389128 T--TGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTT 6389071
Query 34962 TTACAAAGATCTGCATG 34978
| || ||||||||||||
Sbjct 6389070 TCACGAAGATCTGCATG 6389054
>seq4
Length=14320061
Score = 113 bits (124), Expect = 3e-20
Identities = 156/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| ||| |||||||| ||||| ||||| | ||| |||| | ||
Sbjct 6306124 AGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 6306183
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||||||||| |||| ||| |||||||| | || | || ||||||||
Sbjct 6306184 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 6306243
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || || |||||| || | ||| ||
Sbjct 6306244 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAAT 6306299
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || || |||||||||||
Sbjct 6306300 TGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/142 (73%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 34744 ATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTA 34801
||||| |||| || || | ||||| ||||||||||| || ||| ||||| |||||
Sbjct 10684798 ATCATGGTTCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTAGACTCTTTCTGGATGTTG 10684857
Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861
|| |||| |||| | || |||| || |||||||| || || || ||||| | ||| ||
Sbjct 10684858 TAATCCGCTAGGGTTCGGCCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGA 10684917
Query 34862 TCTTGCGGCACCCCCTCCTTGT 34883
||| | || | || || ||||
Sbjct 10684918 TCTGGTGGTATACCTTCTTTGT 10684939
>seq6
Length=18523719
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/198 (71%), Gaps = 12/198 (6%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| || ||||| || |||| ||| |||| | || || || || || || || ||
Sbjct 17514181 CTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAA 17514122
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| |||| ||||||||| | || | ||| |||||||| | || || ||||||
Sbjct 17514121 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGT- 17514063
Query 34906 TGCTATCGATTCATTGGC------CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGT 34959
|||||||| || | ||| || || | || ||||| || |||||||||||
Sbjct 17514062 ---TATCGATTG--TGTCTGAACTCTCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGT 17514008
Query 34960 CTTTACAAAGATCTGCAT 34977
||| ||||| ||||||||
Sbjct 17514007 CTTGACAAAAATCTGCAT 17513990
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|| || |||| ||| | |||| |||||||| ||||| || || | | | || |
Sbjct 1443193 CTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCG 1443252
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| |||| ||||||||||||||||| || | |||||| || | || | |||||||||
Sbjct 1443253 TCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTG 1443312
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || ||| ||| | || | ||| | || || || | ||| ||
Sbjct 1443313 TCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATA 1443372
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || ||||| ||||| || |||||||||||
Sbjct 1443373 GTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| || | |||| ||| ||||| ||||| ||||| | || |||| ||||
Sbjct 17513973 AGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCT 17513914
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||| || | |||||||| | || | ||||| || ||
Sbjct 17513913 TCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCT 17513854
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || ||| |||||| || | ||||| ||| | |||||| || | || ||
Sbjct 17513853 TGGATCTTTGCTTTGAC--AT--TGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGAT 17513798
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || || | || || |||||||| |||||
Sbjct 17513797 GGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||| || || || |||| ||| ||||||||| ||||| || || | | | || |
Sbjct 1438290 CCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCC 1438349
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
|| |||| ||||||||||||||||| |||| ||||| || | || | || |||||
Sbjct 1438350 GTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTT 1438409
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
|| | || || ||| ||| | || | ||| | || || || | ||| ||
Sbjct 1438410 ATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGAT 1438469
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || ||||| ||||| || |||||||||||
Sbjct 1438470 GGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
>seq642
Length=6837
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|| || |||| ||| | |||| |||||||| ||||| || || | | | || |
Sbjct 154 CTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCG 213
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| |||| ||||||||||||||||| || | |||||| || | || | |||||||||
Sbjct 214 TCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTG 273
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || ||| ||| | || | ||| | || || || | ||| ||
Sbjct 274 TCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATA 333
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || ||||| ||||| || |||||||||||
Sbjct 334 GTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq762
Length=4953
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||| || || || |||| ||| ||||||||| ||||| || || | | | || |
Sbjct 154 CCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCC 213
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
|| |||| ||||||||||||||||| |||| ||||| || | || | || |||||
Sbjct 214 GTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTT 273
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
|| | || || ||| ||| | || | ||| | || || || | ||| ||
Sbjct 274 ATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGAT 333
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || ||||| ||||| || |||||||||||
Sbjct 334 GGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325687016611883
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |