Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 114 8e-21 seq4 113 3e-20 seq6 93.3 3e-14 seq642 91.5 1e-13 seq762 87.8 1e-12 >seq5 Length=16150104 Score = 114 bits (126), Expect = 8e-21 Identities = 145/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | || | || | || ||||| || || |||||||| Sbjct 6389246 CTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAA 6389187 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || | ||| |||||||| | || | ||||||||||| | || || |||||| | Sbjct 6389186 AATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGAC--A 6389129 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| || || ||||| |||| |||||||||||| ||||| ||||| | Sbjct 6389128 T--TGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTT 6389071 Query 34962 TTACAAAGATCTGCATG 34978 | || |||||||||||| Sbjct 6389070 TCACGAAGATCTGCATG 6389054 >seq4 Length=14320061 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||| ||||| ||||| | ||| |||| | || Sbjct 6306124 AGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 6306183 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||| |||| ||| |||||||| | || | || |||||||| Sbjct 6306184 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 6306243 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| || | ||| || Sbjct 6306244 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAAT 6306299 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || ||||||||||| Sbjct 6306300 TGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 34744 ATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTA 34801 ||||| |||| || || | ||||| ||||||||||| || ||| ||||| ||||| Sbjct 10684798 ATCATGGTTCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTAGACTCTTTCTGGATGTTG 10684857 Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 || |||| |||| | || |||| || |||||||| || || || ||||| | ||| || Sbjct 10684858 TAATCCGCTAGGGTTCGGCCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGA 10684917 Query 34862 TCTTGCGGCACCCCCTCCTTGT 34883 ||| | || | || || |||| Sbjct 10684918 TCTGGTGGTATACCTTCTTTGT 10684939 >seq6 Length=18523719 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || |||| ||| |||| | || || || || || || || || Sbjct 17514181 CTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAA 17514122 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||||||| | || | ||| |||||||| | || || |||||| Sbjct 17514121 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGT- 17514063 Query 34906 TGCTATCGATTCATTGGC------CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGT 34959 |||||||| || | ||| || || | || ||||| || ||||||||||| Sbjct 17514062 ---TATCGATTG--TGTCTGAACTCTCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGT 17514008 Query 34960 CTTTACAAAGATCTGCAT 34977 ||| ||||| |||||||| Sbjct 17514007 CTTGACAAAAATCTGCAT 17513990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || |||| ||| | |||| |||||||| ||||| || || | | | || | Sbjct 1443193 CTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCG 1443252 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| ||||||||||||||||| || | |||||| || | || | ||||||||| Sbjct 1443253 TCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTG 1443312 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||| ||| | || | ||| | || || || | ||| || Sbjct 1443313 TCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATA 1443372 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| ||||| || ||||||||||| Sbjct 1443373 GTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| || | |||| ||| ||||| ||||| ||||| | || |||| |||| Sbjct 17513973 AGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCT 17513914 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || | |||||||| | || | ||||| || || Sbjct 17513913 TCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCT 17513854 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| |||||| || | ||||| ||| | |||||| || | || || Sbjct 17513853 TGGATCTTTGCTTTGAC--AT--TGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGAT 17513798 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || | || || |||||||| ||||| Sbjct 17513797 GGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || || || |||| ||| ||||||||| ||||| || || | | | || | Sbjct 1438290 CCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCC 1438349 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || |||| ||||||||||||||||| |||| ||||| || | || | || ||||| Sbjct 1438350 GTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTT 1438409 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || ||| ||| | || | ||| | || || || | ||| || Sbjct 1438410 ATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGAT 1438469 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||| ||||| || ||||||||||| Sbjct 1438470 GGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 >seq642 Length=6837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || |||| ||| | |||| |||||||| ||||| || || | | | || | Sbjct 154 CTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCG 213 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| ||||||||||||||||| || | |||||| || | || | ||||||||| Sbjct 214 TCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTG 273 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||| ||| | || | ||| | || || || | ||| || Sbjct 274 TCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATA 333 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| ||||| || ||||||||||| Sbjct 334 GTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq762 Length=4953 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || || || |||| ||| ||||||||| ||||| || || | | | || | Sbjct 154 CCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCC 213 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || |||| ||||||||||||||||| |||| ||||| || | || | || ||||| Sbjct 214 GTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTT 273 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || ||| ||| | || | ||| | || || || | ||| || Sbjct 274 ATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGAT 333 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||| ||||| || ||||||||||| Sbjct 334 GGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687016611883