Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq762 100 2e-16
seq6 100 2e-16
seq1 95.1 1e-14
seq3 93.3 3e-14
seq5 82.4 6e-11
>seq762
Length=4953
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609
||| | ||||| || || ||||| ||| | || ||||| ||||| ||| |||| |||
Sbjct 375 TTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAA 316
Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668
||| || || ||| | | || ||| ||||| ||||| ||||| | ||
Sbjct 315 AGCTCT-GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCC 257
Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728
|||||||||||||||||| | || || || ||| ||||||||| | ||| |||| ||
Sbjct 256 GGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGA 197
Query 107729 CTACAACATTCAAAAGGAGTCTAC 107752
|||||||| || |||||||| ||
Sbjct 196 TTACAACATCCAGAAGGAGTCGAC 173
>seq6
Length=18523719
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609
||| | ||||| || || ||||| ||| | || ||||| ||||| ||| |||| |||
Sbjct 1438511 TTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAA 1438452
Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668
||| || || ||| | | || ||| ||||| ||||| ||||| | ||
Sbjct 1438451 AGCTCT-GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCC 1438393
Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728
|||||||||||||||||| | || || || ||| ||||||||| | ||| |||| ||
Sbjct 1438392 GGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGA 1438333
Query 107729 CTACAACATTCAAAAGGAGTCTAC 107752
|||||||| || |||||||| ||
Sbjct 1438332 TTACAACATCCAGAAGGAGTCGAC 1438309
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||
Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| |||||| |||||||| || | || ||| ||
Sbjct 17513822 -GACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCA 17513880
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | || ||||| ||||| || || | ||| | || ||||||||
Sbjct 17513881 GCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACAA 17513940
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || || ||||| || | || |||||
Sbjct 17513941 CATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971
>seq1
Length=19836964
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
||||||||||| ||||| ||||| |||| || || || || ||| | || ||| |
Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| || ||| | | || || ||||| || || ||||| | || ||||
Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAT 7692111
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| | || |||| || || || |||||||| |||| | ||| | ||||| |||
Sbjct 7692112 CAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTAC 7692171
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||||| || |||||||| ||| | ||| ||||
Sbjct 7692172 AACATCCAGAAGGAGTCGACGCTTCACTTGGT 7692203
>seq3
Length=15215380
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| ||||| | || ||||||||||||||| ||||| ||| |
Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG---CGTGCCCGTGGAT 107672
|| ||||| | | ||||| ||||||| || || ||||| || ||| |||
Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCC---GGAC 11243601
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|| ||||| | || | || ||||||||||| ||||| | || | || || |||
Sbjct 11243602 CAATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTAC 11243661
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||||| |||||||| || || | ||| | ||||||
Sbjct 11243662 AACATCCAAAAGGAATCAACACTTCACCTTGTGTTG 11243697
>seq5
Length=16150104
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| || || || ||||| |||| || || ||||| ||| | || || |
Sbjct 6389052 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCC 6389111
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| || ||| | | || ||| ||||| || || || || | || |||
Sbjct 6389112 TCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGAC 6389171
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| || | |||| || || ||||||||||| |||| | || | || ||||||
Sbjct 6389172 CAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTAC 6389231
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||||| |||||||| ||| |||| |||||
Sbjct 6389232 AACATTCAGAAGGAGTCGACGCTGCATCTGGTG 6389264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398869717069873
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |