Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq762 100 2e-16 seq6 100 2e-16 seq1 95.1 1e-14 seq3 93.3 3e-14 seq5 82.4 6e-11 >seq762 Length=4953 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || ||||| ||| | || ||||| ||||| ||| |||| ||| Sbjct 375 TTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAA 316 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || ||| ||||| ||||| ||||| | || Sbjct 315 AGCTCT-GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCC 257 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||||||||| | || || || ||| ||||||||| | ||| |||| || Sbjct 256 GGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGA 197 Query 107729 CTACAACATTCAAAAGGAGTCTAC 107752 |||||||| || |||||||| || Sbjct 196 TTACAACATCCAGAAGGAGTCGAC 173 >seq6 Length=18523719 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || ||||| ||| | || ||||| ||||| ||| |||| ||| Sbjct 1438511 TTTTAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAA 1438452 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || ||| ||||| ||||| ||||| | || Sbjct 1438451 AGCTCT-GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCC 1438393 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||||||||| | || || || ||| ||||||||| | ||| |||| || Sbjct 1438392 GGATCAGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGA 1438333 Query 107729 CTACAACATTCAAAAGGAGTCTAC 107752 |||||||| || |||||||| || Sbjct 1438332 TTACAACATCCAGAAGGAGTCGAC 1438309 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||||||||||||||| ||||| || |||| ||| ||| Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| |||||||| || | || ||| || Sbjct 17513822 -GACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCA 17513880 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || ||||| ||||| || || | ||| | || |||||||| Sbjct 17513881 GCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACAA 17513940 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || ||||| || | || ||||| Sbjct 17513941 CATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971 >seq1 Length=19836964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||| ||||| ||||| |||| || || || || ||| | || ||| | Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || ||||| || || ||||| | || |||| Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAT 7692111 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| || || || |||||||| |||| | ||| | ||||| ||| Sbjct 7692112 CAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTAC 7692171 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| ||| | ||| |||| Sbjct 7692172 AACATCCAGAAGGAGTCGACGCTTCACTTGGT 7692203 >seq3 Length=15215380 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||||||||||||| ||||| ||| | Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG---CGTGCCCGTGGAT 107672 || ||||| | | ||||| ||||||| || || ||||| || ||| ||| Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCC---GGAC 11243601 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||||| | || | || ||||||||||| ||||| | || | || || ||| Sbjct 11243602 CAATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTAC 11243661 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| || || | ||| | |||||| Sbjct 11243662 AACATCCAAAAGGAATCAACACTTCACCTTGTGTTG 11243697 >seq5 Length=16150104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||| ||| | || || | Sbjct 6389052 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCC 6389111 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || ||| ||||| || || || || | || ||| Sbjct 6389112 TCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGAC 6389171 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| || | |||| || || ||||||||||| |||| | || | || |||||| Sbjct 6389172 CAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTAC 6389231 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||| |||||||| ||| |||| ||||| Sbjct 6389232 AACATTCAGAAGGAGTCGACGCTGCATCTGGTG 6389264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869717069873