Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 159 3e-34 seq6 140 2e-28 seq1 114 1e-20 seq642 98.7 8e-16 >seq3 Length=15215380 Score = 159 bits (176), Expect = 3e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||| | ||||| || ||||| ||||| ||||| ||||| |||| ||||||| Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| ||||| ||||| | || ||||| | || ||||||| || || || || Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTT 11243581 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| ||||| || ||| | || |||||||| ||| || ||||| || || | Sbjct 11243580 GTCTTG-AATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAA 11243522 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | ||||| |||||||| ||||| Sbjct 11243521 TGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 114 bits (126), Expect = 1e-20 Identities = 158/217 (73%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||| | |||||| || ||||| ||||| ||||| |||||||||| || | Sbjct 11192544 ACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGGCC 11192603 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| || ||| | || | || ||||| ||||| | || || || || Sbjct 11192604 ATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCCTT 11192663 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| | | || || |||| | || | ||||| ||| ||| || |||||||||| Sbjct 11192664 GTCTTGGA-TCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGACCTCAAGAGTTA 11192722 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | || |||||||| || ||||| Sbjct 11192723 TGGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758 Score = 107 bits (118), Expect = 1e-18 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC-AATGGTGCGAG 29629 ||| || || | ||||| || || ||||| ||||||||||||||||| || | |||| Sbjct 11243929 ACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGAC 11243870 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| ||||| || || || ||| | || | || ||||| ||||| | || || |||| Sbjct 11243869 CATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTT 11243810 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | ||||| ||| || | || ||| | || | | ||||| ||| || |||||||| Sbjct 11243809 TATCTTG-AATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTG 11243751 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| |||||||| Sbjct 11243750 ATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713 >seq6 Length=18523719 Score = 140 bits (154), Expect = 2e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||||||||| || ||||| ||||| || ||||| || || || Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || || | || | || ||||| ||||| ||| Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | ||| ||||||| | || | |||||||| || || Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 17513809 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 || ||||| || || ||||| ||||| ||||| ||||| || ||||| | |||| Sbjct 17513808 TCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCATCTGGAAAC 17513754 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| || || ||||| ||||| || | || || || Sbjct 1443196 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCT 1443255 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | |||||||||||||| ||||||||||| ||||| Sbjct 1443256 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 1443315 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | |||||||| ||| || || || || ||||| Sbjct 1443316 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 1443375 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||| || |||||||| Sbjct 1443376 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 >seq1 Length=19836964 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || || || || || || | |||| | |||||||||||||| Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || || ||| | || | ||||| || || || Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| ||||| || |||||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 29549 TTTATCGTTGTCCT-CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATG 29607 |||||| | |||| ||||| | | || ||||| ||||| || || ||||| || ||| Sbjct 10373727 TTTATCATGGTCCCACCCCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATG 10373786 Query 29608 TTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGC 29667 || || ||||| | || || ||| || |||||||| |||||| ||||||| || || Sbjct 10373787 TTGTAGTCCGCTAGCGTTCGGCCATCTTCTAGTTGTTTACCAGCAAATATCAACCTCTGT 10373846 Query 29668 TGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| || || || ||||||||||| ||| Sbjct 10373847 TGATCAGGTGGTATTCCCTCTTTGTCCTGT 10373876 >seq642 Length=6837 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| || || ||||| ||||| || | || || || Sbjct 157 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCT 216 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | |||||||||||||| ||||||||||| ||||| Sbjct 217 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 276 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | |||||||| ||| || || || || ||||| Sbjct 277 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 336 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||| || |||||||| Sbjct 337 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212359590437