Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq3 159 3e-34
seq6 140 2e-28
seq1 114 1e-20
seq642 98.7 8e-16
>seq3
Length=15215380
Score = 159 bits (176), Expect = 3e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| ||| | ||||| || ||||| ||||| ||||| ||||| |||| |||||||
Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| ||||| ||||| | || ||||| | || ||||||| || || || ||
Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTT 11243581
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| ||||| || ||| | || |||||||| ||| || ||||| || || |
Sbjct 11243580 GTCTTG-AATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAA 11243522
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||||||||| | ||||| |||||||| |||||
Sbjct 11243521 TGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 114 bits (126), Expect = 1e-20
Identities = 158/217 (73%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| ||| | |||||| || ||||| ||||| ||||| |||||||||| || |
Sbjct 11192544 ACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGGCC 11192603
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || ||||| || ||| | || | || ||||| ||||| | || || || ||
Sbjct 11192604 ATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCCTT 11192663
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| | | || || |||| | || | ||||| ||| ||| || ||||||||||
Sbjct 11192664 GTCTTGGA-TCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGACCTCAAGAGTTA 11192722
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || | || |||||||| || |||||
Sbjct 11192723 TGGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758
Score = 107 bits (118), Expect = 1e-18
Identities = 157/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC-AATGGTGCGAG 29629
||| || || | ||||| || || ||||| ||||||||||||||||| || | ||||
Sbjct 11243929 ACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGAC 11243870
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
||| ||||| || || || ||| | || | || ||||| ||||| | || || ||||
Sbjct 11243869 CATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTT 11243810
Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
| ||||| ||| || | || ||| | || | | ||||| ||| || ||||||||
Sbjct 11243809 TATCTTG-AATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTG 11243751
Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || || ||||| ||||||||
Sbjct 11243750 ATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713
>seq6
Length=18523719
Score = 140 bits (154), Expect = 2e-28
Identities = 172/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || | ||| ||||||||||| || ||||| ||||| || ||||| || || ||
Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || || || || | || | || ||||| ||||| |||
Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | ||| ||||||| | || | |||||||| || ||
Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 17513809
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794
|| ||||| || || ||||| ||||| ||||| ||||| || ||||| | ||||
Sbjct 17513808 TCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCATCTGGAAAC 17513754
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| ||||| || || |||||||| || || ||||| ||||| || | || || ||
Sbjct 1443196 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCT 1443255
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| | || || || || | || | |||||||||||||| ||||||||||| |||||
Sbjct 1443256 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 1443315
Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754
|| | || ||| || | || | |||||||| ||| || || || || |||||
Sbjct 1443316 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 1443375
Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | || ||||| || ||||||||
Sbjct 1443376 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
>seq1
Length=19836964
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| |||| ||| || ||||| |||||||| || || || || ||||| ||||||||
Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | || || || || || || || | |||| | ||||||||||||||
Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || |||||||| | || || ||| | || | ||||| || || ||
Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || ||||| || || || |||| |||||| ||||| || ||||||||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992
Score = 100 bits (110), Expect = 2e-16
Identities = 113/150 (75%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 29549 TTTATCGTTGTCCT-CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATG 29607
|||||| | |||| ||||| | | || ||||| ||||| || || ||||| || |||
Sbjct 10373727 TTTATCATGGTCCCACCCCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATG 10373786
Query 29608 TTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGC 29667
|| || ||||| | || || ||| || |||||||| |||||| ||||||| || ||
Sbjct 10373787 TTGTAGTCCGCTAGCGTTCGGCCATCTTCTAGTTGTTTACCAGCAAATATCAACCTCTGT 10373846
Query 29668 TGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
||||| || || || ||||||||||| |||
Sbjct 10373847 TGATCAGGTGGTATTCCCTCTTTGTCCTGT 10373876
>seq642
Length=6837
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| ||||| || || |||||||| || || ||||| ||||| || | || || ||
Sbjct 157 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCT 216
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| | || || || || | || | |||||||||||||| ||||||||||| |||||
Sbjct 217 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC 276
Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754
|| | || ||| || | || | |||||||| ||| || || || || |||||
Sbjct 277 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTC 336
Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | || ||||| || ||||||||
Sbjct 337 TTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385212359590437
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |