Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3 158 2e-33
seq6 154 3e-32
seq1 129 1e-24
seq762 116 7e-21
seq4 102 2e-16
>seq3
Length=15215380
Score = 158 bits (174), Expect = 2e-33
Identities = 166/217 (76%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT-CTAC 82653
||| ||||| | ||| |||||||| |||||||| || |||||||| | || | | | ||
Sbjct 11243929 ACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGAC 11243870
Query 82654 CGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCT 82713
| ||||| || || || || ||||||||||| || || || || || | || ||||| |
Sbjct 11243869 CATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTT 11243810
Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773
||||||||||||| || || ||||| |||||| ||||| ||| || || | ||| |
Sbjct 11243809 TATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGA 11243750
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 11243749 TGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713
Score = 111 bits (122), Expect = 3e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| || | ||| || || ||||| || || || || ||||| | || | | |||
Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || ||||| ||||| ||||| | ||| | ||| || || | || ||||||||
Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTT 11243581
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||||| |||||||| |||| || || | || ||||| | || ||
Sbjct 11243580 GTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAAT 11243521
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| || | || || |||||||| |||||
Sbjct 11243520 GGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 107 bits (118), Expect = 4e-18
Identities = 154/216 (71%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| || | || || || ||||| || || || || ||||| | ||| | ||
Sbjct 11192544 ACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGGCC 11192603
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || ||||| || |||||||| || || || || || ||| | |||||||||||
Sbjct 11192604 ATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCCTT 11192663
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||| | || | || ||||| || || | ||| || || | ||||||
Sbjct 11192664 GTCTTGGATCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGACCTCAAGAGTTAT 11192723
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||| | ||||| ||||| || |||||
Sbjct 11192724 GGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758
>seq6
Length=18523719
Score = 154 bits (170), Expect = 3e-32
Identities = 166/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| ||||| ||||| || || ||||| ||||| || || | | | | | |||
Sbjct 17514661 ACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACC 17514602
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || ||||| ||||| ||||| || || ||||| || ||||| || ||||||||
Sbjct 17514601 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTT 17514542
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| |||||||| || || || || || || || || | || | || || ||||| || |
Sbjct 17514541 GTCCTGAATCTTAGCCTTCACGTTGTCGATTGTGTC-TGAGCTCTCAACCTCCAAGGTAA 17514483
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||||||||||||| ||||| |||||||| |||||
Sbjct 17514482 TAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446
Score = 147 bits (162), Expect = 4e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| | ||| || || || || || || || |||||||| || || || ||||
Sbjct 17513990 TACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 17513931
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | ||| |||||||| || || || || ||||| || || || || || ||||
Sbjct 17513930 CGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAG 17513871
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| ||||| || |||||||| ||||||||||| ||||| || || || ||| || | ||
Sbjct 17513870 GAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAG-AGCTCTCG 17513812
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | ||| || ||||||||||| || || || ||||| || |||||
Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 129 bits (142), Expect = 1e-24
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || | ||| || || ||||| ||||| ||||| ||||| |
Sbjct 17514446 TACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCG 17514387
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | ||| || || || ||||| ||||| ||||| ||||| ||||| ||||| |
Sbjct 17514386 CAAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTG 17514327
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| || |||||||| || ||||||||||| || || || || || || || | || | ||
Sbjct 17514326 GGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTC-TGAGCTCTCA 17514268
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | ||| || || || || || | || || ||||| ||||||||
Sbjct 17514267 ACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| | || || || || || ||||| || || ||||| | | | ||| |||||
Sbjct 1438294 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC 1438353
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| | || ||||| || ||||| ||||| || ||||| ||||| || |||||||||||
Sbjct 1438354 TCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 1438413
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|| ||||| ||||| || || || || || ||| ||| || || | || || |||
Sbjct 1438414 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 1438473
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || | ||||| || || ||||||||
Sbjct 1438474 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
Score = 111 bits (122), Expect = 3e-19
Identities = 140/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || ||||| || || || |||||||| || || ||||||| || | | |||
Sbjct 1442900 ACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACC 1442959
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || |||||||| ||||| || | || || || || || |||||||||||
Sbjct 1442960 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTT 1443019
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
||||||||||| || || || || ||||| || || || | || || |||| || |
Sbjct 1443020 GTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTC-GGAGCTCTCCACCTCCAGTGTGA 1443078
Query 82774 TCGTCTTGCC 82783
| ||||||||
Sbjct 1443079 TGGTCTTGCC 1443088
Score = 102 bits (112), Expect = 2e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || || || || || || |||||||| ||||| ||||||| || | | |||
Sbjct 1437997 ACGGAGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACC 1438056
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || |||||||| ||||| || | || || || || || || ||||||||
Sbjct 1438057 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTT 1438116
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
|||||| ||||| || || || || ||||| || ||
Sbjct 1438117 ATCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTC 1438152
>seq1
Length=19836964
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|||||||||| ||| || || ||||| || || || || ||||| || || ||||| |
Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | || |||||||| || || || || || || || || | || ||||| || ||
Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| ||||| ||||| || || ||||| || ||||| || | || ||
Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACC 7692042
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| | ||||||||||| || || | || || ||||| || |||||| ||
Sbjct 7692041 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTTT 7691991
Score = 93.3 bits (102), Expect = 8e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|| ||||| ||||| || |||||||| || || || || | ||| ||| || ||||||
Sbjct 10373757 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCTAGCGTTCGGCCATCTTCT 10373816
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720
|||||||| |||||||| || | || |||||||| || |||||||| || || || ||
Sbjct 10373817 AGTTGTTTACCAGCAAATATCAACCTCTGTTGATCAGGTGGTATTCCCTCTTTGTCCTG 10373875
>seq762
Length=4953
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| | || || || || || ||||| || || ||||| | | | ||| |||||
Sbjct 158 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC 217
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| | || ||||| || ||||| ||||| || ||||| ||||| || |||||||||||
Sbjct 218 TCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 277
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|| ||||| ||||| || || || || || ||| ||| || || | || || |||
Sbjct 278 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 337
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || | ||||| || || ||||||||
Sbjct 338 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
Score = 111 bits (122), Expect = 3e-19
Identities = 140/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || ||||| || || || |||||||| || || ||||||| || | | |||
Sbjct 4765 ACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACC 4824
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || |||||||| ||||| || | || || || || || |||||||||||
Sbjct 4825 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTT 4884
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
||||||||||| || || || || ||||| || || || | || || |||| || |
Sbjct 4885 GTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTC-GGAGCTCTCCACCTCCAGTGTGA 4943
Query 82774 TCGTCTTGCC 82783
| ||||||||
Sbjct 4944 TGGTCTTGCC 4953
>seq4
Length=14320061
Score = 102 bits (112), Expect = 2e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||| | | || || | ||| |||||||| |||||||| || || ||||| | |
Sbjct 10684807 CCACCTCTAAGCCTCAAGACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 10684866
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| ||| || ||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct 10684867 AGGGTTCGGCCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCTGGTGGT 10684926
Query 82704 ATTCCTTCCTT 82714
|| ||||| ||
Sbjct 10684927 ATACCTTCTTT 10684937
Score = 93.3 bits (102), Expect = 8e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || || ||||| ||||| || || || || | || | | ||
Sbjct 6306120 ACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCC 6306179
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || || || ||||| || || || | || || || || ||||| |||||||||||
Sbjct 6306180 GTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTT 6306239
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| || || ||||| || || || || | || || || | || ||
Sbjct 6306240 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAAT 6306299
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| ||||| | || || || || ||||||||
Sbjct 6306300 TGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981808871433923
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |