Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 seq6 154 3e-32 seq1 129 1e-24 seq762 116 7e-21 seq4 102 2e-16 >seq3 Length=15215380 Score = 158 bits (174), Expect = 2e-33 Identities = 166/217 (76%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT-CTAC 82653 ||| ||||| | ||| |||||||| |||||||| || |||||||| | || | | | || Sbjct 11243929 ACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGAC 11243870 Query 82654 CGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCT 82713 | ||||| || || || || ||||||||||| || || || || || | || ||||| | Sbjct 11243869 CATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTT 11243810 Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||||||||||| || || ||||| |||||| ||||| ||| || || | ||| | Sbjct 11243809 TATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGA 11243750 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||| ||||| ||||| |||||||| Sbjct 11243749 TGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713 Score = 111 bits (122), Expect = 3e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | ||| || || ||||| || || || || ||||| | || | | ||| Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||| ||||| ||||| | ||| | ||| || || | || |||||||| Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTT 11243581 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||||| |||||||| |||| || || | || ||||| | || || Sbjct 11243580 GTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAAT 11243521 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || |||||||| ||||| Sbjct 11243520 GGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 107 bits (118), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || || || ||||| || || || || ||||| | ||| | || Sbjct 11192544 ACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGGCC 11192603 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||| || |||||||| || || || || || ||| | ||||||||||| Sbjct 11192604 ATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCCTT 11192663 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| | || | || ||||| || || | ||| || || | |||||| Sbjct 11192664 GTCTTGGATCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGACCTCAAGAGTTAT 11192723 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | ||||| ||||| || ||||| Sbjct 11192724 GGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758 >seq6 Length=18523719 Score = 154 bits (170), Expect = 3e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| ||||| || || ||||| ||||| || || | | | | | ||| Sbjct 17514661 ACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACC 17514602 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||| ||||| ||||| || || ||||| || ||||| || |||||||| Sbjct 17514601 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTT 17514542 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || |||||||| || || || || || || || || | || | || || ||||| || | Sbjct 17514541 GTCCTGAATCTTAGCCTTCACGTTGTCGATTGTGTC-TGAGCTCTCAACCTCCAAGGTAA 17514483 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||||||||| ||||| |||||||| ||||| Sbjct 17514482 TAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| || || || || || || || |||||||| || || || |||| Sbjct 17513990 TACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 17513931 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| |||||||| || || || || ||||| || || || || || |||| Sbjct 17513930 CGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAG 17513871 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | ||||| || |||||||| ||||||||||| ||||| || || || ||| || | || Sbjct 17513870 GAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAG-AGCTCTCG 17513812 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || ||||||||||| || || || ||||| || ||||| Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | ||| || || ||||| ||||| ||||| ||||| | Sbjct 17514446 TACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCG 17514387 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || || ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 17514386 CAAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTG 17514327 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || |||||||| || ||||||||||| || || || || || || || | || | || Sbjct 17514326 GGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTC-TGAGCTCTCA 17514268 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || || || || || | || || ||||| |||||||| Sbjct 17514267 ACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || || || || || ||||| || || ||||| | | | ||| ||||| Sbjct 1438294 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC 1438353 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || ||||| || ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 1438354 TCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 1438413 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| ||||| || || || || || ||| ||| || || | || || ||| Sbjct 1438414 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 1438473 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | ||||| || || |||||||| Sbjct 1438474 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 Score = 111 bits (122), Expect = 3e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || || |||||||| || || ||||||| || | | ||| Sbjct 1442900 ACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACC 1442959 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | || || || || || ||||||||||| Sbjct 1442960 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTT 1443019 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||||||||||| || || || || ||||| || || || | || || |||| || | Sbjct 1443020 GTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTC-GGAGCTCTCCACCTCCAGTGTGA 1443078 Query 82774 TCGTCTTGCC 82783 | |||||||| Sbjct 1443079 TGGTCTTGCC 1443088 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || || || || |||||||| ||||| ||||||| || | | ||| Sbjct 1437997 ACGGAGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACC 1438056 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | || || || || || || |||||||| Sbjct 1438057 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTT 1438116 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||| ||||| || || || || ||||| || || Sbjct 1438117 ATCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTC 1438152 >seq1 Length=19836964 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| ||| || || ||||| || || || || ||||| || || ||||| | Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || |||||||| || || || || || || || || | || ||||| || || Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||| || ||||| || | || || Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACC 7692042 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||||||||||| || || | || || ||||| || |||||| || Sbjct 7692041 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTTT 7691991 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| ||||| || |||||||| || || || || | ||| ||| || |||||| Sbjct 10373757 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCTAGCGTTCGGCCATCTTCT 10373816 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 |||||||| |||||||| || | || |||||||| || |||||||| || || || || Sbjct 10373817 AGTTGTTTACCAGCAAATATCAACCTCTGTTGATCAGGTGGTATTCCCTCTTTGTCCTG 10373875 >seq762 Length=4953 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || || || || || ||||| || || ||||| | | | ||| ||||| Sbjct 158 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC 217 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || ||||| || ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 218 TCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 277 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| ||||| || || || || || ||| ||| || || | || || ||| Sbjct 278 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 337 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | ||||| || || |||||||| Sbjct 338 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 Score = 111 bits (122), Expect = 3e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || || |||||||| || || ||||||| || | | ||| Sbjct 4765 ACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACC 4824 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | || || || || || ||||||||||| Sbjct 4825 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTT 4884 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||||||||||| || || || || ||||| || || || | || || |||| || | Sbjct 4885 GTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTC-GGAGCTCTCCACCTCCAGTGTGA 4943 Query 82774 TCGTCTTGCC 82783 | |||||||| Sbjct 4944 TGGTCTTGCC 4953 >seq4 Length=14320061 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || || | ||| |||||||| |||||||| || || ||||| | | Sbjct 10684807 CCACCTCTAAGCCTCAAGACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 10684866 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || ||||| ||||| || |||||||| || || |||||||||||||| ||| Sbjct 10684867 AGGGTTCGGCCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCTGGTGGT 10684926 Query 82704 ATTCCTTCCTT 82714 || ||||| || Sbjct 10684927 ATACCTTCTTT 10684937 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || ||||| ||||| || || || || | || | | || Sbjct 6306120 ACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCC 6306179 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || ||||| || || || | || || || || ||||| ||||||||||| Sbjct 6306180 GTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTT 6306239 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || || || || | || || || | || || Sbjct 6306240 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAAT 6306299 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| | || || || || |||||||| Sbjct 6306300 TGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981808871433923