Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq6 120 3e-22 seq762 114 1e-20 seq5 98.7 1e-15 seq1 98.7 1e-15 seq3 93.3 4e-14 seq2 84.2 2e-11 >seq4 Length=14320061 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || ||||| || ||||| ||| | | ||| ||||||||||||||| || Sbjct 6306138 GGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCC 6306197 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| |||||||| ||||||||||| |||||| ||| Sbjct 6306198 GGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 6306257 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || ||| || |||| ||| | || || || || || || Sbjct 6306258 GACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGT 6306317 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 6306318 TTTCACGAAGATCTGCAT 6306335 >seq6 Length=18523719 Score = 120 bits (132), Expect = 3e-22 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| ||||||||||| ||| ||| ||| | |||||||| Sbjct 1438007 AAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCA-TCCTCGAG 1438065 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || ||||| |||||||| || ||| Sbjct 1438066 CTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTTATCTTGGAT 1438125 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | | |||||| || | |||| ||| || || Sbjct 1438126 CTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGTGTGATGGTCTTACC 1438185 Score = 116 bits (128), Expect = 4e-21 Identities = 136/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| || |||||||| ||| ||| ||| | ||||| || Sbjct 1442910 AAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCA-TCCTCAAG 1442968 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || ||||| ||||||||||| || Sbjct 1442969 CTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAAT 1443028 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| | |||||| || | |||| ||| ||||| Sbjct 1443029 CTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCC 1443088 Query 133634 G 133634 | Sbjct 1443089 G 1443089 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| ||||||||||| | | ||| ||| | ||||| ||||| || | Sbjct 17514415 GGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCA-TCCTCCAGCTGTTTCC 17514357 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| | ||| ||||| || ||||| ||||||||||| |||||| || Sbjct 17514356 CAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCCT 17514297 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | ||| || || | || | |||||| ||||| || | Sbjct 17514296 TGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAATGGTTTTCCCGGTAAGGG 17514237 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 17514236 TTTTCACAAAAATCTGCAT 17514218 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||||||||| || ||||| || | | ||| ||| | || || || Sbjct 17513967 AAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCA-TCTTCTAG 17513909 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || |||| ||||||||| ||||| || || || || || ||| Sbjct 17513908 CTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTGGAT 17513849 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| |||| | || | ||||| | | ||| || |||| |||| ||| ||||| Sbjct 17513848 CTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCC 17513789 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | |||||| || || || ||||| Sbjct 17513788 TGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| ||| ||| || ||| | ||||| ||||| || || Sbjct 17514642 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACCA-TCCTCAAGCTGTTTCCC 17514584 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||||| ||| ||||| |||||||| ||||||||||| ||||| ||| Sbjct 17514583 AGCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTT 17514524 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | ||| || || | ||| | || ||||| |||| ||| Sbjct 17514523 CACGTTGTCGATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGT 17514464 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 17514463 CTTCACAAATATTTGCAT 17514446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || |||||||| | | ||| ||| || ||||| || ||| Sbjct 17514186 GTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCC 17514127 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| | ||||||||| || ||||| ||||||||||| ||||| |||| Sbjct 17514126 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTG 17514067 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | ||| || || | |||| ||||||||| || || || Sbjct 17514066 ACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTC 17514007 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 17514006 TTGACAAAAATCTGCAT 17513990 >seq762 Length=4953 Score = 114 bits (126), Expect = 1e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| || |||||||| ||| ||| ||| | ||||| || Sbjct 4775 AAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCA-TCCTCAAG 4833 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || ||||| ||||||||||| || Sbjct 4834 CTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAAT 4893 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| | |||||| || | |||| ||| ||||| Sbjct 4894 CTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCC 4953 >seq5 Length=16150104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| ||| | | ||| ||| ||| || ||||| || | Sbjct 6389251 GTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGT--ACGGCCGTCTTCCAGCTGTTTCC 6389194 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || || || || |||||||| |||||| | Sbjct 6389193 CGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTT 6389134 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| || || || || | ||| | ||| || || || || | Sbjct 6389133 TGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGG 6389074 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||| ||||||||| Sbjct 6389073 TTTTCACGAAGATCTGCATG 6389054 >seq1 Length=19836964 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | | || | ||| || |||||||| || Sbjct 7692191 GTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCCAGCTGCTTCCCG 7692132 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| || |||||||| || || ||||| ||||||||||| |||||| ||| Sbjct 7692131 GCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGGATCTTCGCCTTC 7692072 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||||||| | ||| || || | ||| | || || || || || ||| Sbjct 7692071 ACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTT 7692012 Query 133644 TTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 7692011 TTCACAAAGATTTGCAT 7691995 >seq3 Length=15215380 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || |||||||| | | ||| ||| | ||||||||||| || || Sbjct 11243681 GTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACCA-TCCTCGAGCTGTTTACC 11243623 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | |||| | || ||||| || | ||| ||||||||||| |||||| ||| Sbjct 11243622 AGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTGAATCTTTGTCTT 11243563 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||| || |||| ||| | ||||||||| || || || Sbjct 11243562 TACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTTGCCAGTGAGTGT 11243503 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 11243502 TTTCACAAATATTTGCAT 11243485 >seq2 Length=13294645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 120633 GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 |||| ||||||||| || || || | ||| ||||| || || |||| ||||||| Sbjct 9186739 GTAGATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGA 9186680 Query 120693 AAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCC 120752 || || | |||||||||| ||| | | || | |||| || | | ||||| || Sbjct 9186679 GAAGGTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGAGCAGAAGCTACC 9186620 Query 120753 CGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGT 120812 || ||||| | || || || ||| || ||||| || | |||||| || ||| | Sbjct 9186619 GGAGAAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGA 9186560 Query 120813 CTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTC 120872 | |||||||||||||| ||||||| ||| || ||| ||||| || || || Sbjct 9186559 T---CCATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTC 9186503 Query 120873 GAACGCG 120879 || |||| Sbjct 9186502 GATCGCG 9186496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411995698680