Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 2e-22
seq5 111 1e-19
seq4 100 2e-16
seq6 86.0 4e-12
>seq1
Length=19836964
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||||| ||| | ||||| || || || ||| || || ||||||||||| | |
Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | |||| |||| || || ||||| ||||||| |||||||||||| ||||
Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || ||| ||| |||| ||| | |||||| || || ||
Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || ||||| || || |||| ||||| |||||||| |||||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995
>seq5
Length=16150104
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| ||| || || ||| || || |||||||| |||| |
Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| |||| ||||| ||||| ||||| || |||||||| || | ||
Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || ||| ||| | ||| ||| | ||||||| ||||| ||
Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCGGAGGATTCGAC 6389103
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| || || || || || |||| ||||| || |||||||||||
Sbjct 6389102 CTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055
>seq4
Length=14320061
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||| |||| ||| |||||| |||| || | || |||||||| |||
Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| |||||||| || | || | ||||| ||||| || || || | |||
Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATT 6306263
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | ||||||| || || || || | || || || || ||||||| ||||| ||
Sbjct 6306264 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCAC 6306323
Query 33738 AAAGATCTGCAT 33749
|||||||||||
Sbjct 6306324 GAAGATCTGCAT 6306335
>seq6
Length=18523719
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||||| ||| | ||| || || ||| ||||| ||||||||||| |
Sbjct 17514217 ACCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGC 17514158
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| |||||| |||| || | ||||| || ||||| || | | |||||| ||| | ||
Sbjct 17514157 GAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGG 17514098
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA---TTC 33698
| ||||| ||||| ||| ||| || | || | ||||| ||| ||
Sbjct 17514097 GATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTC---TGAACTCTC 17514041
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || | ||||| ||||| || || | || || ||||| |||||||||
Sbjct 17514040 AACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCATA 17513989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328698163141440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |