Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq5 111 1e-19 seq4 100 2e-16 seq6 86.0 4e-12 >seq1 Length=19836964 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||||| || || || ||| || || ||||||||||| | | Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| |||| || || ||||| ||||||| |||||||||||| |||| Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| ||| | |||||| || || || Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || |||| ||||| |||||||| ||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995 >seq5 Length=16150104 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| ||| || || ||| || || |||||||| |||| | Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| ||||| ||||| ||||| || |||||||| || | || Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| ||| | ||| ||| | ||||||| ||||| || Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCGGAGGATTCGAC 6389103 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || |||| ||||| || ||||||||||| Sbjct 6389102 CTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055 >seq4 Length=14320061 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| |||||| |||| || | || |||||||| ||| Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||| || | || | ||||| ||||| || || || | ||| Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATT 6306263 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||| || || || || | || || || || ||||||| ||||| || Sbjct 6306264 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCAC 6306323 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 6306324 GAAGATCTGCAT 6306335 >seq6 Length=18523719 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| ||| | ||| || || ||| ||||| ||||||||||| | Sbjct 17514217 ACCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGC 17514158 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| |||||| |||| || | ||||| || ||||| || | | |||||| ||| | || Sbjct 17514157 GAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGG 17514098 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA---TTC 33698 | ||||| ||||| ||| ||| || | || | ||||| ||| || Sbjct 17514097 GATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTC---TGAACTCTC 17514041 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||| || || | || || ||||| ||||||||| Sbjct 17514040 AACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCATA 17513989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698163141440