Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 262 6e-64 >seq2 Length=13294645 Score = 262 bits (290), Expect = 6e-64 Identities = 403/563 (72%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| || |||||||| || || || Sbjct 9186156 TGTTCCCGATCCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCATCTTTC 9186214 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||| ||||| || ||||| || ||| | |||||| |||||| | || | || Sbjct 9186215 TGGACGGCCGAAGAAGTCGATCTTT-CGCA-AGACGGTCGCGACTGGGAGAATCTAAACG 9186272 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| ||| || || |||||||| ||||| |||||||| || ||||||| || || ||| Sbjct 9186273 ACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTT-CGCCGCCTCAGACGGAATC 9186331 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || ||| |||||| || || ||| | | ||||| ||| Sbjct 9186332 GTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGGCGCGTGCT 9186391 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||||||||| || || ||||| ||||| || | ||| ||||| || Sbjct 9186392 TTCTACGGTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGTCTCCTCCTC 9186451 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 ||||| ||| |||||||| |||| ||||| ||||| ||||| ||||| || | Sbjct 9186452 GACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCGAAACCATC 9186511 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GA 1456169 || | || || || ||| | |||||||||||||||||| | || ||| || Sbjct 9186512 CCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATC-----GATGGATCTCAGA 9186566 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 | ||||||||| | |||||| || ||| | ||||| || ||||| ||||| || || Sbjct 9186567 C-TTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGC 9186625 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAA 1456288 |||||| | || || ||||| || ||||| || ||||||||||| || ||| ||| Sbjct 9186626 TTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGG-ATTAACCTTCTCCAA 9186684 Query 1456289 CGAATTTATCAGTCGCGACGAAG 1456311 ||| || ||| || ||||||| Sbjct 9186685 CGAGTTGATCTCACGAGACGAAG 9186707 Score = 111 bits (122), Expect = 2e-18 Identities = 210/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAAC-AAGCCGTCGA 1456505 ||| || || || || || || || ||| |||||||| | || || || |||| || Sbjct 9186706 AGGCTTACATTGCGATTTCGCGTGCCTGATCTACACGCT-CTTGTGGACGAAGCTCTC-- 9186762 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTC---GAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562 ||| | || | | || |||||| || |||||||||||||||| |||||||| Sbjct 9186763 -CGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTGT 9186821 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACAT 1456621 |||| |||||||| ||| | | || |||||| | || || ||| | |||||||| Sbjct 9186822 GCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAACAGTGAC--CTGATGAGTCAGTACAT 9186879 Query 1456622 TGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG 1456681 || | ||||| || || | || | | ||||||||| | ||| ||| ||| | | Sbjct 9186880 TG-AGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGTACGG-TAAGGTGTACGGTGTG 9186937 Query 1456682 GCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || || ||||| ||||||||||| |||||||| |||| || || ||||| |||||| Sbjct 9186938 GCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGGAAAACAAACTTCTTCGAG 9186997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177670669672034