Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 262 6e-64
>seq2
Length=13294645
Score = 262 bits (290), Expect = 6e-64
Identities = 403/563 (72%), Gaps = 15/563 (3%)
Strand=Plus/Plus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| |||| |||| | ||| ||||| |||||| || |||||||| || || ||
Sbjct 9186156 TGTTCCCGATCCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCATCTTTC 9186214
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870
||||| ||||| || ||||| || ||| | |||||| |||||| | || | ||
Sbjct 9186215 TGGACGGCCGAAGAAGTCGATCTTT-CGCA-AGACGGTCGCGACTGGGAGAATCTAAACG 9186272
Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930
||| ||| || || |||||||| ||||| |||||||| || ||||||| || || |||
Sbjct 9186273 ACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTT-CGCCGCCTCAGACGGAATC 9186331
Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990
|| ||||| || || ||| |||||| || || ||| | | ||||| |||
Sbjct 9186332 GTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGGCGCGTGCT 9186391
Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050
|| ||||| ||||||||||| || || ||||| ||||| || | ||| ||||| ||
Sbjct 9186392 TTCTACGGTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGTCTCCTCCTC 9186451
Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110
||||| ||| |||||||| |||| ||||| ||||| ||||| ||||| || |
Sbjct 9186452 GACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCGAAACCATC 9186511
Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GA 1456169
|| | || || || ||| | |||||||||||||||||| | || ||| ||
Sbjct 9186512 CCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATC-----GATGGATCTCAGA 9186566
Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228
| ||||||||| | |||||| || ||| | ||||| || ||||| ||||| || ||
Sbjct 9186567 C-TTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGC 9186625
Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAA 1456288
|||||| | || || ||||| || ||||| || ||||||||||| || ||| |||
Sbjct 9186626 TTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGG-ATTAACCTTCTCCAA 9186684
Query 1456289 CGAATTTATCAGTCGCGACGAAG 1456311
||| || ||| || |||||||
Sbjct 9186685 CGAGTTGATCTCACGAGACGAAG 9186707
Score = 111 bits (122), Expect = 2e-18
Identities = 210/300 (70%), Gaps = 13/300 (4%)
Strand=Plus/Plus
Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAAC-AAGCCGTCGA 1456505
||| || || || || || || || ||| |||||||| | || || || |||| ||
Sbjct 9186706 AGGCTTACATTGCGATTTCGCGTGCCTGATCTACACGCT-CTTGTGGACGAAGCTCTC-- 9186762
Query 1456506 CCGACGTGCCCAAGCAGATCATCGTC---GAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562
||| | || | | || |||||| || |||||||||||||||| ||||||||
Sbjct 9186763 -CGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTGT 9186821
Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACAT 1456621
|||| |||||||| ||| | | || |||||| | || || ||| | ||||||||
Sbjct 9186822 GCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAACAGTGAC--CTGATGAGTCAGTACAT 9186879
Query 1456622 TGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG 1456681
|| | ||||| || || | || | | ||||||||| | ||| ||| ||| | |
Sbjct 9186880 TG-AGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGTACGG-TAAGGTGTACGGTGTG 9186937
Query 1456682 GCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|| || ||||| ||||||||||| |||||||| |||| || || ||||| ||||||
Sbjct 9186938 GCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGGAAAACAAACTTCTTCGAG 9186997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177670669672034
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |