Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 125 6e-24 seq1 122 8e-23 seq762 113 4e-20 seq6 113 4e-20 seq4 111 1e-19 seq642 109 5e-19 seq3 82.4 7e-11 >seq5 Length=16150104 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | ||| |||||| ||||||||||| ||||| Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||| || || || || || || ||||||||||||| ||| Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| || | | | | | |||||| ||||| ||| Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || ||||| | |||||||| || |||||||| Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055 >seq1 Length=19836964 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| || ||||||||||| || | || | | |||| ||| Sbjct 7692203 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCC 7692144 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || |||| |||||||| |||| || | | |||||||| | Sbjct 7692143 AGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGG 7692084 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | ||||||| ||| || ||||| | || ||||| || Sbjct 7692083 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTC 7692024 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||| | ||||||||||| || |||||| Sbjct 7692023 CCCGTTAGGGTTTTCACAAAGATTTGCATT 7691994 >seq762 Length=4953 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | || | ||| | || |||||| || ||||||||||||||| Sbjct 143 CCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 202 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| |||| |||| |||||| || || || || | | |||||| |||| |||| Sbjct 203 AAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 262 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| ||| |||| || |||| | |||| | | ||||| ||| ||| Sbjct 263 ATACCTTCCTTATCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 318 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || || || | ||| || || || |||||||| Sbjct 319 CACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 >seq6 Length=18523719 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | || | ||| | || |||||| || ||||||||||||||| Sbjct 1438279 CCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 1438338 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| |||| |||| |||||| || || || || | | |||||| |||| |||| Sbjct 1438339 AAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 1438398 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| ||| |||| || |||| | |||| | | ||||| ||| ||| Sbjct 1438399 ATACCTTCCTTATCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 1438454 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || || || | ||| || || || |||||||| Sbjct 1438455 CACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || | ||||| || | || ||||| || ||||||||||||||| Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| |||||| || || || || | || ||||| |||| |||| Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | |||||||||| |||| || |||| | |||| | | ||||| ||| ||| Sbjct 1443301 ATACCCTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 1443356 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | ||| || || || |||||||| Sbjct 1443357 AACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||| || || ||||| |||| Sbjct 17514674 TTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGG 17514615 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||| || || | || || ||||| || || || || || | || ||| ||||||| || Sbjct 17514614 CCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAG 17514555 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTC---GCTCGAT 35683 | | | ||||||||| ||||| ||||| |||| | | ||||| |||| Sbjct 17514554 GGATCCCTTCCTTGTCCTGAATCTTAGCCTTCAC-GTTGTCGATTGTGTCTGAGCTC--- 17514499 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||| || || || || || |||||||| ||||||||||| ||||| Sbjct 17514498 TCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | |||| ||||||||| ||||||||||| || Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||| || |||||||| || | | ||||||||| | || Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||||||| ||||| ||| | | | | ||||| ||| || Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTC---TCA 17514040 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| ||||| ||||| | || || ||||| |||||||| Sbjct 17514039 ACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||| || || |||||||| || || | || || | || || Sbjct 17513971 CACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTC 17513912 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| || || || | || ||||||||||| ||||| | ||| || || Sbjct 17513911 TAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTG 17513852 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 ||||||| || | | | | | ||||| |||| || ||||| | ||||| || Sbjct 17513851 GATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCGACCTCGAGAGTGATGGT 17513795 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || |||||||||||||| || ||||| Sbjct 17513794 CTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 >seq4 Length=14320061 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||| | ||| || |||| || |||||||| || || || Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||||| ||| | | ||||||||| |||||| ||| | | | Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||| | || || || || || || | |||||||| Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 6306325 AAGATCTGCAT 6306335 >seq642 Length=6837 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || | ||||| || | || ||||| || ||||||||||||||| Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| |||||| || || || || | || ||||| |||| |||| Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | |||||||||| |||| || |||| | |||| | | ||||| ||| ||| Sbjct 262 ATACCCTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 317 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | ||| || || || |||||||| Sbjct 318 AACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq3 Length=15215380 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || | || |||||||| ||||||||||| || Sbjct 11243711 CCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCA 11243652 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG-G 35628 | ||| || | || || ||||| ||||| || || || || | || ||||||| | | Sbjct 11243651 AGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCG 11243592 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTC 35685 | | || |||||||| |||||| ||| | | | | || ||||| ||| || Sbjct 11243591 ATCCCT-TCCTTGTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTC---TC 11243536 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || ||||| || || | |||||||||||||| ||||| Sbjct 11243535 AACTTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450785389921560