Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 147 2e-30 seq5 131 2e-25 seq1 129 6e-25 seq3 127 2e-24 seq6 118 1e-21 seq642 86.0 6e-12 >seq4 Length=14320061 Score = 147 bits (162), Expect = 2e-30 Identities = 176/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || |||||||| || |||||||||||| | Sbjct 6306109 CCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCG 6306168 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || |||||||| |||||||| || || || Sbjct 6306169 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 6306228 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| ||| | |||||||| || || || Sbjct 6306229 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 6306288 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTTTTG 134723 ||||| ||||| || || || |||| ||||| ||||| || ||||| |||| || || Sbjct 6306289 TCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCTTTGCTTCTG 6306346 >seq5 Length=16150104 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| || || ||||| || ||||| ||||||||||||||| | Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || |||||||| || || ||||| || |||||||| || || || Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || |||||| ||| | |||||||| ||||| || Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || |||| ||||| ||||| || ||||| || Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052 >seq1 Length=19836964 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||||||||| || || | || | ||| ||||| || ||||| || |||||||| || | Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || ||| || ||||| || || || ||||||| |||||||||||| ||||| Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || || || ||| | ||||||||||| || || Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || || || || |||| ||||| || || ||||||||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992 >seq3 Length=15215380 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || || ||||||||||| |||||||| || ||| |||| || Sbjct 11243702 AGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGA 11243643 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||||||||| || || || || || | || || || |||| || ||||| Sbjct 11243642 CCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCC 11243583 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||| || || || | ||||| || || || ||||| ||| Sbjct 11243582 TTGTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTA 11243523 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | ||||| || || |||||||| Sbjct 11243522 ATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 102 bits (112), Expect = 8e-17 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| || || || || ||||||||||| |||||||| || ||| || || Sbjct 11192542 AGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGG 11192601 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || ||||| || | | |||||| || || | || ||||| Sbjct 11192602 CCATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCC 11192661 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || |||| ||| | ||||| || ||| || || ||||| Sbjct 11192662 TTGTCTTGGATCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGACCTCAAGAGTT 11192721 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||| ||||| ||| |||||| Sbjct 11192722 ATGGTCTTGCCTGTAAGAGTCTTAAC-AAAGATTGCAT 11192758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || | ||| || | || ||||| || || || || || |||||||| || || | Sbjct 11243942 TTCCACCACGGAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCG 11243883 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | || | | || || |||||||| || || ||||| || | | |||||| || || Sbjct 11243882 CTAAAGTCGCGACCATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGT 11243823 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 | ||||||||||| |||||||| || || || || | | || || ||| Sbjct 11243822 TGGATGCCTTCTTTATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCTTTCA 11243763 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 11243762 ACCTCAAGAGTGATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713 >seq6 Length=18523719 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || || |||||||| || || ||||| || ||| ||| || Sbjct 17514435 AGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGA 17514376 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || || || || | | ||| || || || || || ||||| Sbjct 17514375 CCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCC 17514316 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| ||| ||||| || | |||||| || || || || |||||| Sbjct 17514315 TTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTA 17514256 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| | ||||| || ||||| ||||| Sbjct 17514255 ATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | ||| | || || ||||| || || || ||||||||||| | Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || || || || | | |||||| || || || Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| || ||| |||||| ||| | ||||| || || || Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 17513809 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || ||||||||||| || || |||||||| Sbjct 17513808 TCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || ||||||||||| || |||||||| ||| | Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| || || || || || | | |||||||| || || Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||| || ||| | ||||| || ||| || Sbjct 1443301 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACC 1443360 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | ||| |||||||| || ||||| Sbjct 1443361 TCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 >seq642 Length=6837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || ||||||||||| || |||||||| ||| | Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| || || || || || | | |||||||| || || Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||| || ||| | ||||| || ||| || Sbjct 262 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACC 321 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | ||| |||||||| || ||||| Sbjct 322 TCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389195431640