Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 1e-22
seq4 100 4e-16
>seq7
Length=17055980
Score = 122 bits (134), Expect = 1e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | ||||| | ||| | || | ||||| |||| ||||||
Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| |||||||| ||| ||| |||||||| ||||||| || || || ||
Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||||||||| || || ||| || | |||||| ||||| |||||||||||
Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| || ||||||||||| ||||| | ||||| |||||
Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||||| ||| || | || ||||| || |||||||||||| | ||| | | ||
Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| |||| || || || || |||||| || ||||| || | | || | ||||| |
Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTGTGAATGCCAACAGAAACCCTCATCAGC 15540403
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| |||||||| | ||| ||| ||| | | ||| || ||||||||||| || |||
Sbjct 15540402 ATGTGCTGAGGCCTTTCAACCACTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAAGA 15540343
Query 70171 GTTTTAAACCCAAAATA 70187
||||| || ||||| ||
Sbjct 15540342 GTTTTGAATCCAAAGTA 15540326
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793
|| ||||| ||| | ||||| || |||||| ||||| | | |||||||||| || |||
Sbjct 15542653 AAGACTCTGCGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAGA 15542594
Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853
||||| ||||| ||||||||||| ||||| |||| | | |||||| | ||||
Sbjct 15542593 ATTTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACCAGAAGAGAATTTCTGATTCCATTC 15542534
Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913
|| || ||||| | ||| ||| ||||| | | || || | ||||||||
Sbjct 15542533 TTTGAAATAATATCTCTGAGAGCAGCCCAGTCCCAGCGGTTCGAAGGAATTACATTCCAC 15542474
Query 68914 AGATCGTATTGTAGAATTCC 68933
| ||| ||| ||||||||
Sbjct 15542473 ATATCAGGTTGAAGAATTCC 15542454
>seq4
Length=14320061
Score = 100 bits (110), Expect = 4e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851
|||||| || | |||||||||||| | |||||||| ||| ||| || ||||| ||||
Sbjct 321124 CAGCATTGGGACAATACCATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGC 321065
Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911
|| |||||| || || | ||| || || || || ||| || | ||||||
Sbjct 321064 ACGGATATTATGAACTGAAACACCAATACCCCCAGCGGATTTGCTTATAACAGCACACTC 321005
Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||| | ||| ||||| |||||||| |||||||||||| |||| | ||||| |||||
Sbjct 321004 TTTTAGTGTTTCATAGATACCCTCAATGCTATCATCTTTCATACAGATCAGAAAGCAGCT 320945
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| ||||| || | ||||||||||| |||||||||||| | | || | || ||
Sbjct 320827 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 320768
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||| | || | || | ||||| || || || || | || || | |||||
Sbjct 320767 GTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCAACCCTCATCAG 320708
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || ||||| | ||| || ||| | | |||||| ||||| ||| | || ||
Sbjct 320707 CATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTAAGATCTCTCAAG 320648
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
|||||||| ||||| || | ||| ||| || | |||||||| ||
Sbjct 320647 TGTTTTAAATCCAAAGTAATCATATTCAAAATCACGGTCGTAAATGAT 320600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686896289673480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |