Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq4 100 4e-16 >seq7 Length=17055980 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | ||||| |||| |||||| Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| ||| ||| |||||||| ||||||| || || || || Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| || || ||| || | |||||| ||||| ||||||||||| Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||||||||| ||||| | ||||| ||||| Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||||| ||| || | || ||||| || |||||||||||| | ||| | | || Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || |||||| || ||||| || | | || | ||||| | Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTGTGAATGCCAACAGAAACCCTCATCAGC 15540403 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||| ||| ||| | | ||| || ||||||||||| || ||| Sbjct 15540402 ATGTGCTGAGGCCTTTCAACCACTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAAGA 15540343 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || ||||| || Sbjct 15540342 GTTTTGAATCCAAAGTA 15540326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||| ||| | ||||| || |||||| ||||| | | |||||||||| || ||| Sbjct 15542653 AAGACTCTGCGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAGA 15542594 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 ||||| ||||| ||||||||||| ||||| |||| | | |||||| | |||| Sbjct 15542593 ATTTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACCAGAAGAGAATTTCTGATTCCATTC 15542534 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || ||||| | ||| ||| ||||| | | || || | |||||||| Sbjct 15542533 TTTGAAATAATATCTCTGAGAGCAGCCCAGTCCCAGCGGTTCGAAGGAATTACATTCCAC 15542474 Query 68914 AGATCGTATTGTAGAATTCC 68933 | ||| ||| |||||||| Sbjct 15542473 ATATCAGGTTGAAGAATTCC 15542454 >seq4 Length=14320061 Score = 100 bits (110), Expect = 4e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 |||||| || | |||||||||||| | |||||||| ||| ||| || ||||| |||| Sbjct 321124 CAGCATTGGGACAATACCATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGC 321065 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 || |||||| || || | ||| || || || || ||| || | |||||| Sbjct 321064 ACGGATATTATGAACTGAAACACCAATACCCCCAGCGGATTTGCTTATAACAGCACACTC 321005 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||| | ||| ||||| |||||||| |||||||||||| |||| | ||||| ||||| Sbjct 321004 TTTTAGTGTTTCATAGATACCCTCAATGCTATCATCTTTCATACAGATCAGAAAGCAGCT 320945 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||||||||||| |||||||||||| | | || | || || Sbjct 320827 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 320768 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| | || | || | ||||| || || || || | || || | ||||| Sbjct 320767 GTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCAACCCTCATCAG 320708 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || ||| | | |||||| ||||| ||| | || || Sbjct 320707 CATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTAAGATCTCTCAAG 320648 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| || | ||| ||| || | |||||||| || Sbjct 320647 TGTTTTAAATCCAAAGTAATCATATTCAAAATCACGGTCGTAAATGAT 320600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896289673480