Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq6 111 1e-19 seq3 95.1 1e-14 >seq1 Length=19836964 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||||| || | ||| || || || || || ||||| || | | Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATC-CGC 7692163 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | | ||||||| ||||| || |||||| |||| |||||||| ||||||||||| Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| |||| | || | ||||| | | ||||| Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||| || |||||||||||||||||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995 >seq6 Length=18523719 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || ||||| || || |||||||| || ||| ||| | ||||| Sbjct 17513970 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGT-GCGACCATCTTC 17513912 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| ||||||||| | || || | ||| || ||||| || | ||||||||||| Sbjct 17513911 TAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTG 17513852 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | ||||| | | || || || ||||| || | || Sbjct 17513851 GATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTT 17513792 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || | ||||||||||||||||||||| Sbjct 17513791 GCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || |||||||||||| || | || | || || Sbjct 17514654 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACCATCCTCA 17514595 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| | ||||| | |||||| ||||| || | || || || || Sbjct 17514594 AGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 17514535 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||||| | ||||| || | || |||| ||| Sbjct 17514534 ATCTTAGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 17514475 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| |||||||| ||||||||| Sbjct 17514474 CCTGTCAAAGTCTTCACAAATATTTGCATA 17514445 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTC 27091 ||||| || | || | || || || || || |||||||| || | || || |||| | Sbjct 17514432 CGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATC-CGCAAGTGTGCGACC 17514374 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 || || |||||||| || ||| | ||||| | |||||| || || || | || || || Sbjct 17514373 ATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTT 17514314 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| || | | | || | ||||||| | ||||| || ||||| || Sbjct 17514313 GTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAAT 17514254 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || ||||||||||| || |||||| Sbjct 17514253 GGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCATA 17514217 >seq3 Length=15215380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | || | || || || ||||| || ||||| || | | |||| | Sbjct 11243699 CGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACCA 11243640 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||||||||| ||| | |||| | || ||| ||||||| | || || || Sbjct 11243639 TCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTG 11243580 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| | || | | || |||||||||| |||||||| || || || Sbjct 11243579 TCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATG 11243520 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||||| || || ||||||||||| |||||||| Sbjct 11243519 GTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| ||||| ||||| || || || ||| | || ||| | ||||||||||| || || Sbjct 11243910 GTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACCATCTTCGAGCTGATTCCC 11243851 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || || | ||| || ||||| | | || |||||||| |||||| || Sbjct 11243850 GGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTTATCTTGAATCTTGGCCTT 11243791 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | | || | | |||||| || ||||| || | || ||||||| ||| Sbjct 11243790 CACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGATGGTCTTACCCGTCAAAGT 11243731 Query 27230 TTTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 11243730 CTTGACAAAGATCTGCAT 11243713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926854360184