Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 1e-27
seq1 136 5e-27
seq7 120 4e-22
seq4 120 4e-22
seq2 95.1 2e-14
>seq5
Length=16150104
Score = 138 bits (152), Expect = 1e-27
Identities = 199/279 (71%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | || |||||||| || || ||||||||||||||| ||
Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||
Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311
Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
|| || || | || | || || ||||| | ||| || |||||||||||
Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCC 10841371
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776
||||| | ||||||||| | | || | ||| || ||| || || || ||| ||
Sbjct 10841372 ACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCA 10841431
Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815
|| | |||| ||| | ||||||||| |||||||| |||
Sbjct 10841432 GCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470
>seq1
Length=19836964
Score = 136 bits (150), Expect = 5e-27
Identities = 301/448 (67%), Gaps = 10/448 (2%)
Strand=Plus/Plus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| |||||||| || || | || | ||| ||||| ||||| | | || || ||
Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|||| || | || ||||| | | ||||| ||||||||||| || || | |||||
Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626
| || |||||||| |||||||| || |||| |||| | | |||| | ||
Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 1801814
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| ||||| || ||||| | || ||||| || || |||||| ||| ||| ||
Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
||||| || |||||| |||||| ||||| ||||||||||| ||||| | | |||||
Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAGAG 1801934
Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804
||| | ||| || ||| | |||||| || |||||| || | ||||| || |
Sbjct 1801935 --ATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCC 1801992
Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864
| ||||| || ||| | || || | ||| |||||| ||||||| | |
Sbjct 1801993 CAGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGA 1802052
Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
| ||||| || | ||| ||||| |||||
Sbjct 1802053 ACCTCTCAGGCTTCTTCAGAAACTCCAC 1802080
>seq7
Length=17055980
Score = 120 bits (132), Expect = 4e-22
Identities = 197/280 (70%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | | |||||||| || || |||||||||||||| ||
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | ||| ||||| | | |||| | || || |||||||||||||| || || ||||||
Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425
Query 11657 CATGGTTGATTTTCGCGGGCGATTTC--AAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714
|| || |||||| || ||| ||| | ||| | |||||| ||||| ||||
Sbjct 4202424 CAAGGAGC--TTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 4202367
Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774
||||||| | ||||||||| | | |||| ||| || |||||| || || ||| |
Sbjct 4202366 CAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 4202307
Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
| || | |||| || | || ||||| || || || ||
Sbjct 4202306 CAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267
>seq4
Length=14320061
Score = 120 bits (132), Expect = 4e-22
Identities = 275/413 (67%), Gaps = 6/413 (1%)
Strand=Plus/Plus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| || || | | ||| || || |||| || | ||| || || | | |||||
Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTTCAAAT 12447139
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
||||||||||| || || | ||||| | || |||||||| |||||||| || |
Sbjct 12447140 CCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 12447196
Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
||| || | | | |||| | || || |||||||| ||||| | |||||||| ||
Sbjct 12447197 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 12447256
Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719
|| ||||| ||| | | || |||||||| || ||| |||||| |||||||||
Sbjct 12447257 GGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAACA 12447316
Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779
|||||||| ||||| | | | || | || ||| || ||| | |||||| ||
Sbjct 12447317 AACATCTCAACAAACTCAGAACCGGAAATCGAGAAGAAAGGCACACCAGCTTCACCAGCA 12447376
Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839
|| ||| || | || || || || ||||| || ||| || || | |||
Sbjct 12447377 ATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCTTTA 12447436
Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
|||||| ||||||| || |||||||||| | ||| ||||| || ||
Sbjct 12447437 GGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGAC 12447489
Score = 82.4 bits (90), Expect = 1e-10
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || ||||| || || ||||||||||| || || | ||| ||| ||||| | ||
Sbjct 320838 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGC 320779
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| | |||||||| | |||||| |||| || | | ||||||||| | ||
Sbjct 320778 GACATCAAATGGTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCA 320719
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--- 112117
|||| ||| | ||||| || || |||| | | | || | || | || ||||
Sbjct 320718 ACCCTCATCAGCATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGA--CTTTCAAGAGGT 320661
Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
|| || ||||||| ||||| | ||||||||| || | ||| | || ||
Sbjct 320660 AAGATC-TCTCAAGTGTTTTAAATCCAAAGTAATCATATTCAAAATCACG 320612
>seq2
Length=13294645
Score = 95.1 bits (104), Expect = 2e-14
Identities = 134/188 (71%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
|| || ||||| || || | || || |||||| || || ||||||||||| |||||
Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|||| ||| |||| | |||||| ||||||||||||||||| || ||||| || ||
Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589
Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856
|| | | | ||||| || | |||| | |||| | ||| ||||| ||||| |
Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532
Query 122857 GCCTTCTT 122864
|| |||||
Sbjct 9186531 GCTTTCTT 9186524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628020561967200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |