Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 seq1 136 5e-27 seq7 120 4e-22 seq4 120 4e-22 seq2 95.1 2e-14 >seq5 Length=16150104 Score = 138 bits (152), Expect = 1e-27 Identities = 199/279 (71%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || || ||||||||||||||| || Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| ||||| Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | || | || || ||||| | ||| || ||||||||||| Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCC 10841371 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||| | ||||||||| | | || | ||| || ||| || || || ||| || Sbjct 10841372 ACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCA 10841431 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | |||| ||| | ||||||||| |||||||| ||| Sbjct 10841432 GCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470 >seq1 Length=19836964 Score = 136 bits (150), Expect = 5e-27 Identities = 301/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | ||| ||||| ||||| | | || || || Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | ||||| Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| |||| | | |||| | || Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 1801814 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| |||||| ||||| ||||||||||| ||||| | | ||||| Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAGAG 1801934 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || |||||| || | ||||| || | Sbjct 1801935 --ATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCC 1801992 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| | || || | ||| |||||| ||||||| | | Sbjct 1801993 CAGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGA 1802052 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 1802053 ACCTCTCAGGCTTCTTCAGAAACTCCAC 1802080 >seq7 Length=17055980 Score = 120 bits (132), Expect = 4e-22 Identities = 197/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || || |||||||||||||| || Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | |||| | || || |||||||||||||| || || |||||| Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425 Query 11657 CATGGTTGATTTTCGCGGGCGATTTC--AAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || ||| ||| | ||| | |||||| ||||| |||| Sbjct 4202424 CAAGGAGC--TTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 4202367 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||||||||| | | |||| ||| || |||||| || || ||| | Sbjct 4202366 CAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 4202307 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | || ||||| || || || || Sbjct 4202306 CAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267 >seq4 Length=14320061 Score = 120 bits (132), Expect = 4e-22 Identities = 275/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| || | ||| || || | | ||||| Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTTCAAAT 12447139 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | || |||||||| |||||||| || | Sbjct 12447140 CCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 12447196 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 12447197 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 12447256 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || |||||||| || ||| |||||| ||||||||| Sbjct 12447257 GGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAACA 12447316 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | | || | || ||| || ||| | |||||| || Sbjct 12447317 AACATCTCAACAAACTCAGAACCGGAAATCGAGAAGAAAGGCACACCAGCTTCACCAGCA 12447376 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || ||| || | || || || || ||||| || ||| || || | ||| Sbjct 12447377 ATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCTTTA 12447436 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 |||||| ||||||| || |||||||||| | ||| ||||| || || Sbjct 12447437 GGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGAC 12447489 Score = 82.4 bits (90), Expect = 1e-10 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || || ||||||||||| || || | ||| ||| ||||| | || Sbjct 320838 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGC 320779 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | |||||||| | |||||| |||| || | | ||||||||| | || Sbjct 320778 GACATCAAATGGTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCA 320719 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--- 112117 |||| ||| | ||||| || || |||| | | | || | || | || |||| Sbjct 320718 ACCCTCATCAGCATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGA--CTTTCAAGAGGT 320661 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || || ||||||| ||||| | ||||||||| || | ||| | || || Sbjct 320660 AAGATC-TCTCAAGTGTTTTAAATCCAAAGTAATCATATTCAAAATCACG 320612 >seq2 Length=13294645 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | || || |||||| || || ||||||||||| ||||| Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| ||| |||| | |||||| ||||||||||||||||| || ||||| || || Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | | ||||| || | |||| | |||| | ||| ||||| ||||| | Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532 Query 122857 GCCTTCTT 122864 || ||||| Sbjct 9186531 GCTTTCTT 9186524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020561967200