Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq5 89.7 6e-13 seq7 82.4 9e-11 >seq2 Length=13294645 Score = 120 bits (132), Expect = 4e-22 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || |||||| | || ||||||||||| ||||| Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| ||||||||||| || || || ||||||||||| || || ||||| ||||| Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || | ||| ||||| | | || | ||| | |||||||||||||||||| Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || || || ||| || |||| ||| | |||||| Sbjct 9186531 GCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497 >seq5 Length=16150104 Score = 89.7 bits (98), Expect = 6e-13 Identities = 206/308 (67%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 |||||||||||| |||| ||||| || || || || || || ||||||||||||||| Sbjct 2661954 AATTACCGAGAAGCCTACGGTCTTTTCGCCTGTAACGGAATCCTGTTCAACCACGAGTCA 2661895 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 12044 || |||||||| | | |||||||| | |||||| || | | || ||| | Sbjct 2661894 CCTCGTCGTGGAGAGAACTTCGTGACCAGGAAGATAACAAGAGCCCTGGGACGGATCAAG 2661835 Query 12045 GCGGGT---GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 12101 | |||| ||||| || || | | ||||| || | || || || |||||| Sbjct 2661834 GTGGGTTTGCAGAGGAAGCTCTT---CCTTGGGAATCTGCAGGCGTCAAGAGATTGGGGA 2661778 Query 12102 CATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAA 12161 || ||| || ||||| || |||||||| | | || ||||| || | ||||| Sbjct 2661777 TTCGCAGGGGATTACGTTGAGGCAATGTGGCTGATGTTGCAGCAAGAGAAGCCAGACGAT 2661718 Query 12162 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTTAGG 12221 || || || || || | ||| ||||| | || |||||| ||||| | | | || || Sbjct 2661717 TACGTTGTGGCAACAGAGGAATCACACACTGTGGAGGAGTTTCTTGAGGT-TTCGTTTGG 2661659 Query 12222 GAAGTTGG 12229 | | |||| Sbjct 2661658 GTACTTGG 2661651 Score = 86.0 bits (94), Expect = 8e-12 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| | ||||| || || || || | |||||||| | Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCC--T 10841251 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || |||||||| ||||| |||||||| || Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || || || | || || || | ||||| ||||| ||||| |||||| Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCC 10841371 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | ||||||||| | | || | || || ||| || || | ||| || Sbjct 10841372 ACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCA 10841431 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| ||| | ||||||||| ||||| || || Sbjct 10841432 GCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 10841469 >seq7 Length=17055980 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/281 (67%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| || ||||| || || || || | ||||||||| | Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCC--T 4202485 Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || ||| || | | |||| |||| || || ||||| ||||| || ||||| ||| Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425 Query 14270 CATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || |||| | | || ||||| | ||| | || || ||||| |||| Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 4202367 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||| | ||||||||| | | || | ||| || ||| || || | ||| | Sbjct 4202366 CAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 4202307 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || | |||| || | || |||||||| || || ||| Sbjct 4202306 CAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGGT 4202266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423936748920