Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 4e-22
seq5 89.7 6e-13
seq7 82.4 9e-11
>seq2
Length=13294645
Score = 120 bits (132), Expect = 4e-22
Identities = 156/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|| ||||| || ||||| | || || |||||| | || ||||||||||| |||||
Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|||| ||||||||||| || || || ||||||||||| || || ||||| |||||
Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589
Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213
|| | || | ||| ||||| | | || | ||| | ||||||||||||||||||
Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532
Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248
|| || || ||| || |||| ||| | ||||||
Sbjct 9186531 GCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497
>seq5
Length=16150104
Score = 89.7 bits (98), Expect = 6e-13
Identities = 206/308 (67%), Gaps = 7/308 (2%)
Strand=Plus/Minus
Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984
|||||||||||| |||| ||||| || || || || || || |||||||||||||||
Sbjct 2661954 AATTACCGAGAAGCCTACGGTCTTTTCGCCTGTAACGGAATCCTGTTCAACCACGAGTCA 2661895
Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 12044
|| |||||||| | | |||||||| | |||||| || | | || ||| |
Sbjct 2661894 CCTCGTCGTGGAGAGAACTTCGTGACCAGGAAGATAACAAGAGCCCTGGGACGGATCAAG 2661835
Query 12045 GCGGGT---GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 12101
| |||| ||||| || || | | ||||| || | || || || ||||||
Sbjct 2661834 GTGGGTTTGCAGAGGAAGCTCTT---CCTTGGGAATCTGCAGGCGTCAAGAGATTGGGGA 2661778
Query 12102 CATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAA 12161
|| ||| || ||||| || |||||||| | | || ||||| || | |||||
Sbjct 2661777 TTCGCAGGGGATTACGTTGAGGCAATGTGGCTGATGTTGCAGCAAGAGAAGCCAGACGAT 2661718
Query 12162 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTTAGG 12221
|| || || || || | ||| ||||| | || |||||| ||||| | | | || ||
Sbjct 2661717 TACGTTGTGGCAACAGAGGAATCACACACTGTGGAGGAGTTTCTTGAGGT-TTCGTTTGG 2661659
Query 12222 GAAGTTGG 12229
| | ||||
Sbjct 2661658 GTACTTGG 2661651
Score = 86.0 bits (94), Expect = 8e-12
Identities = 187/278 (67%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| ||||||||||||||||| | ||||| || || || || | |||||||| |
Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCC--T 10841251
Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269
| | ||| || || | | ||| | || || |||||||| ||||| |||||||| ||
Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311
Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329
|| || || | || || || | ||||| ||||| ||||| ||||||
Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCC 10841371
Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389
||||| | ||||||||| | | || | || || ||| || || | ||| ||
Sbjct 10841372 ACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCA 10841431
Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|| | |||| ||| | ||||||||| ||||| || ||
Sbjct 10841432 GCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 10841469
>seq7
Length=17055980
Score = 82.4 bits (90), Expect = 9e-11
Identities = 189/281 (67%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| ||||||||||| ||||| || ||||| || || || || | ||||||||| |
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCC--T 4202485
Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269
| | || ||| || | | |||| |||| || || ||||| ||||| || ||||| |||
Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425
Query 14270 CATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327
|| || |||| | | || ||||| | ||| | || || ||||| ||||
Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 4202367
Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387
| ||||| | ||||||||| | | || | ||| || ||| || || | ||| |
Sbjct 4202366 CAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 4202307
Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
| || | |||| || | || |||||||| || || |||
Sbjct 4202306 CAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGGT 4202266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618423936748920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |