Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq1 116 4e-21
seq4 111 2e-19
seq7 105 8e-18
seq5 100 3e-16
>seq2
Length=13294645
Score = 140 bits (154), Expect = 4e-28
Identities = 372/568 (65%), Gaps = 3/568 (1%)
Strand=Plus/Plus
Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429
||||||| | ||||||| | | || ||||| ||||||| | || ||||||||
Sbjct 9186144 ACAGATTCTGTATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCG 9186203
Query 94430 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 94489
|| | ||||| || ||||| || ||||| || | || ||| ||| |||
Sbjct 9186204 AAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTTCGCAAGACGGTCGCGACTGGGAGA 9186263
Query 94490 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCG 94549
|||||| || ||| | ||||| ||| || | || || ||||| || | || |
Sbjct 9186264 ATCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAG 9186323
Query 94550 ATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAG 94609
| ||||| ||| | |||||| || | | ||| || |||||| ||| || |
Sbjct 9186324 ACGGAATCGTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGG 9186383
Query 94610 CGAGATCCTTCTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTA 94669
|| | | ||||| | | ||| | ||| | | || |||| ||||||
Sbjct 9186384 CGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGTC 9186443
Query 94670 AACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729
||| | |||| || || ||||| |||| | || ||||| || |||
Sbjct 9186444 TCCTCCTCGACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCG 9186503
Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789
|||| | || || | |||||||| | ||||| ||||||||| | ||| | |
Sbjct 9186504 AAACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGA---T 9186560
Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849
| | | ||||| ||| || || |||| || || ||||| || |||||||||||||| |
Sbjct 9186561 CTCAGACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCG 9186620
Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909
|| ||||||| | |||| ||||| || ||||||||||||||||| || | |||||
Sbjct 9186621 GTAGCTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCT 9186680
Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937
|||||||| | ||||| || ||||| ||
Sbjct 9186681 CCAACGAGTTGATCTCACGAGACGAAGG 9186708
>seq1
Length=19836964
Score = 116 bits (128), Expect = 4e-21
Identities = 300/453 (66%), Gaps = 8/453 (2%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| ||||| || ||||| | || | || ||||| ||||| | | || || ||
Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|| | |||| || ||| || | | ||||||||||||||||| |||| || || ||
Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700
| || ||||| | ||||||||| || |||| |||| | | |||| | ||
Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 1801814
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
|| ||||| || ||||| | || || ||||| || |||||| || || ||
Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
||||| || || | ||| || ||||| ||||||||||| ||||| | | | | |
Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAG-A 1801933
Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| | | |||||| ||| || |||||| ||||||||| || | || || || ||
Sbjct 1801934 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1801993
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939
||||| || ||| | ||||| ||||| || ||| ||| ||| | | | |
Sbjct 1801994 AGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGAA 1802053
Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972
|||||||| | ||| ||||| ||||| | |||
Sbjct 1802054 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1802086
>seq4
Length=14320061
Score = 111 bits (122), Expect = 2e-19
Identities = 279/420 (66%), Gaps = 8/420 (2%)
Strand=Plus/Plus
Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616
||||| || || | | ||| ||||| || | || | |||||| || | | |||||
Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTTCAAAT 12447139
Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676
||||||||||| || | || || || | ||| ||||| | ||||||||| || |
Sbjct 12447140 CCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 12447196
Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733
||| || | | | |||| | || || |||||||| ||||| | ||||| |||||
Sbjct 12447197 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 12447256
Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793
|| ||||| || | || ||||| || || | ||| || |||||||||
Sbjct 12447257 GGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAACA 12447316
Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852
|||||||| ||||| | | ||||| || | || ||| || ||| || |||||| ||
Sbjct 12447317 AACATCTCAACAAACTCAGAACCGGAA-ATCGAGAAGAAAGGCACACCAGCTTCACCAGC 12447375
Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912
||| ||| || | ||| || || || ||||| || ||| || || |||||
Sbjct 12447376 AATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCTTT 12447435
Query 9913 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972
|| ||| ||| ||| || | ||||||| || | ||| ||||| || || | |||
Sbjct 12447436 AGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGACGACTTC 12447495
>seq7
Length=17055980
Score = 105 bits (116), Expect = 8e-18
Identities = 197/282 (70%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||||||||||||||| |||||||| || ||||| || || || | ||||||||| ||
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485
Query 9673 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | || |||||| | | |||| | || || |||||||||||||| || || || ||
Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
|| || |||||| || || ||||| | ||||| || || || | || || ||
Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 4202369
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846
||||||||| | ||||||||| | | || | ||| || ||| || || | |||
Sbjct 4202368 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTC 4202309
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| || | |||| || | ||| ||||| || || || ||
Sbjct 4202308 TCCAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267
>seq5
Length=16150104
Score = 100 bits (110), Expect = 3e-16
Identities = 194/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||| ||||| | || ||||| || || || | |||||||| ||
Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | ||| ||||| | | ||| ||||||| || ||||||||||||||||| || |||
Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311
Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788
|| || || | ||| || || ||||| | || || || | || |||||||
Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTC-TA-ACTCTAGACGCACCCACAC 10841369
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848
| ||||| | ||||||||| | | || | || || ||| || || | ||| |
Sbjct 10841370 CCACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTC 10841429
Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889
| || | |||| ||| | || |||||||||||||| |||
Sbjct 10841430 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583250177362680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |