Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq1 116 4e-21 seq4 111 2e-19 seq7 105 8e-18 seq5 100 3e-16 >seq2 Length=13294645 Score = 140 bits (154), Expect = 4e-28 Identities = 372/568 (65%), Gaps = 3/568 (1%) Strand=Plus/Plus Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429 ||||||| | ||||||| | | || ||||| ||||||| | || |||||||| Sbjct 9186144 ACAGATTCTGTATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCG 9186203 Query 94430 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 94489 || | ||||| || ||||| || ||||| || | || ||| ||| ||| Sbjct 9186204 AAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTTCGCAAGACGGTCGCGACTGGGAGA 9186263 Query 94490 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCG 94549 |||||| || ||| | ||||| ||| || | || || ||||| || | || | Sbjct 9186264 ATCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAG 9186323 Query 94550 ATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAG 94609 | ||||| ||| | |||||| || | | ||| || |||||| ||| || | Sbjct 9186324 ACGGAATCGTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGG 9186383 Query 94610 CGAGATCCTTCTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTA 94669 || | | ||||| | | ||| | ||| | | || |||| |||||| Sbjct 9186384 CGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGTC 9186443 Query 94670 AACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729 ||| | |||| || || ||||| |||| | || ||||| || ||| Sbjct 9186444 TCCTCCTCGACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCG 9186503 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789 |||| | || || | |||||||| | ||||| ||||||||| | ||| | | Sbjct 9186504 AAACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGA---T 9186560 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | | | ||||| ||| || || |||| || || ||||| || |||||||||||||| | Sbjct 9186561 CTCAGACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCG 9186620 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 || ||||||| | |||| ||||| || ||||||||||||||||| || | ||||| Sbjct 9186621 GTAGCTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCT 9186680 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| | ||||| || ||||| || Sbjct 9186681 CCAACGAGTTGATCTCACGAGACGAAGG 9186708 >seq1 Length=19836964 Score = 116 bits (128), Expect = 4e-21 Identities = 300/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | || ||||| ||||| | | || || || Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | | ||||||||||||||||| |||| || || || Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 1801814 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | || || ||||| || |||||| || || || Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAG-A 1801933 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | |||||| ||| || |||||| ||||||||| || | || || || || Sbjct 1801934 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1801993 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 ||||| || ||| | ||||| ||||| || ||| ||| ||| | | | | Sbjct 1801994 AGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGAA 1802053 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||| | ||| ||||| ||||| | ||| Sbjct 1802054 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1802086 >seq4 Length=14320061 Score = 111 bits (122), Expect = 2e-19 Identities = 279/420 (66%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| ||||| || | || | |||||| || | | ||||| Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTTCAAAT 12447139 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || || | ||| ||||| | ||||||||| || | Sbjct 12447140 CCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 12447196 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||| ||||| | ||||| ||||| Sbjct 12447197 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 12447256 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 || ||||| || | || ||||| || || | ||| || ||||||||| Sbjct 12447257 GGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAACA 12447316 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | | ||||| || | || ||| || ||| || |||||| || Sbjct 12447317 AACATCTCAACAAACTCAGAACCGGAA-ATCGAGAAGAAAGGCACACCAGCTTCACCAGC 12447375 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912 ||| ||| || | ||| || || || ||||| || ||| || || ||||| Sbjct 12447376 AATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCTTT 12447435 Query 9913 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 || ||| ||| ||| || | ||||||| || | ||| ||||| || || | ||| Sbjct 12447436 AGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGACGACTTC 12447495 >seq7 Length=17055980 Score = 105 bits (116), Expect = 8e-18 Identities = 197/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| |||||||| || ||||| || || || | ||||||||| || Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485 Query 9673 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | || |||||| | | |||| | || || |||||||||||||| || || || || Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || |||||| || || ||||| | ||||| || || || | || || || Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 4202369 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||| | ||||||||| | | || | ||| || ||| || || | ||| Sbjct 4202368 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTC 4202309 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || | ||| ||||| || || || || Sbjct 4202308 TCCAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267 >seq5 Length=16150104 Score = 100 bits (110), Expect = 3e-16 Identities = 194/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || ||||| || || || | |||||||| || Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| ||||||| || ||||||||||||||||| || ||| Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788 || || || | ||| || || ||||| | || || || | || ||||||| Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTC-TA-ACTCTAGACGCACCCACAC 10841369 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||| | ||||||||| | | || | || || ||| || || | ||| | Sbjct 10841370 CCACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTC 10841429 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 | || | |||| ||| | || |||||||||||||| ||| Sbjct 10841430 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250177362680