Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 134 9e-27 seq5 125 4e-24 seq3 125 4e-24 seq1 113 3e-20 seq762 86.0 4e-12 >seq6 Length=18523719 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||||||||| | |||||||||||| ||| ||| || || ||||| || || | Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || || |||||||| || || | | ||| |||||||| || Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| || ||| |||| |||| ||| || | || ||||| |||||| || Sbjct 17513868 ATTCCCTCTTTATCTTGGATC-TTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGAC 17513810 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || ||||| ||||||||||| || ||||| Sbjct 17513809 CTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| || ||||||||| ||||| ||||| | || || || Sbjct 17514207 AGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGT 17514148 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| ||||| || ||||| || | | ||| ||||| || || | || ||| Sbjct 17514147 CCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCC 17514088 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| | || ||| || ||||||||| ||||| || |||| || Sbjct 17514087 TTGTCCTGAATCTTC-GCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGT 17514029 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | || || |||||||||||||| Sbjct 17514028 GATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | || || || ||||| || || || ||||| | |||||| || Sbjct 17514435 AGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGA 17514376 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || || || || | | ||||||||| || || | || ||| Sbjct 17514375 CCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCC 17514316 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || ||| || ||||||||| |||||| || || | || Sbjct 17514315 TTGTCCTGAATCTTT-GCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGT 17514257 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| | |||||||||||||||||||| Sbjct 17514256 AATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||| || || || || || | Sbjct 17514672 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCC 17514613 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| ||||| || || || || | | |||||||||||| || Sbjct 17514612 AAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGG 17514553 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || ||| | ||||||||| |||||| || Sbjct 17514552 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCAAC 17514494 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || || || |||||||| || ||||| Sbjct 17514493 CTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446 >seq5 Length=16150104 Score = 125 bits (138), Expect = 4e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||| | ||||| ||| || || |||||| |||||||| || || | Sbjct 6389283 CGCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 6389224 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || ||||||| || ||||| ||||| || ||||| ||||| |||||||| | Sbjct 6389223 CGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTG 6389164 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||||||| |||| || | ||| || | || ||||| | || Sbjct 6389163 GAATTCCCTCCTTGTCCTGGATC-TTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCG 6389105 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | |||||| || || || |||| |||||||| || ||||||||||| Sbjct 6389104 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052 >seq3 Length=15215380 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | || || || |||||||| ||||| ||||||| | Sbjct 11243711 CCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCA 11243652 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || |||||||| || || || || | || ||||||||||| Sbjct 11243651 AGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCG 11243592 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||||| || || || || |||||| ||||| || Sbjct 11243591 ATCCCTTCCTTGTCT-TGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAAC 11243533 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || | ||||||||||| || ||||| Sbjct 11243532 TTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | ||| || || |||||||| ||||| ||||| | | Sbjct 11192533 CCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCA 11192592 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || ||||| |||||||||||||| || | | ||| || ||||| | Sbjct 11192593 AGAGTATGGCCATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGG 11192652 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| || || || | | | ||| |||||| || || || Sbjct 11192653 ATTCCTTCCTTGTCTTGGATC-TTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGAC 11192711 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||||| || || || || | || || ||||| || ||||| Sbjct 11192712 CTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758 >seq1 Length=19836964 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || || |||||| || ||||| ||||| | Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | | ||||||| || || || ||||| || || | |||||| || |||||||| Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | || ||||| ||| || Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTC-GCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||||||||| || || |||| ||||||||||| || ||||| || Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || | ||| ||||| || ||||| ||| || || ||||| || || | Sbjct 10373739 CCACCCCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCT 10373798 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| ||||||||||| |||||||| || | |||||| || || || Sbjct 10373799 AGCGTTCGGCCATCTTCTAGTTGTTTACCAGCAAATATCAACCTCTGTTGATCAGGTGGT 10373858 Query 34600 ACTCCCTCCTTGTC 34613 | |||||| ||||| Sbjct 10373859 ATTCCCTCTTTGTC 10373872 >seq762 Length=4953 Score = 86.0 bits (94), Expect = 4e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 34567 CCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGT 34626 |||||||| || || | ||| |||||||| || | ||||||||||||| |||| || | Sbjct 2 CCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATC-TTCGC 60 Query 34627 TTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAA 34685 || ||| | || ||||| ||||| || || | ||| ||||| || ||||||| Sbjct 61 CTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAG 120 Query 34686 CGTTTTCACAAAAATCTGCAT 34706 |||||| || || |||||||| Sbjct 121 CGTTTTGACGAAGATCTGCAT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724011287481