Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 9e-27
seq5 125 4e-24
seq3 125 4e-24
seq1 113 3e-20
seq762 86.0 4e-12
>seq6
Length=18523719
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|||||||||||||| | |||||||||||| ||| ||| || || ||||| || || |
Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | ||||| || || |||||||| || || | | ||| |||||||| ||
Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||| || ||| |||| |||| ||| || | || ||||| |||||| ||
Sbjct 17513868 ATTCCCTCTTTATCTTGGATC-TTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGAC 17513810
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || || || || ||||| ||||||||||| || |||||
Sbjct 17513809 CTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | |||||| || ||||||||| ||||| ||||| | || || ||
Sbjct 17514207 AGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGT 17514148
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||||||||| ||||| || ||||| || | | ||| ||||| || || | || |||
Sbjct 17514147 CCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCC 17514088
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||||| | || ||| || ||||||||| ||||| || |||| ||
Sbjct 17514087 TTGTCCTGAATCTTC-GCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGT 17514029
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || | || || ||||||||||||||
Sbjct 17514028 GATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||||||| | || || || ||||| || || || ||||| | |||||| ||
Sbjct 17514435 AGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGA 17514376
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || ||||| || || || || | | ||||||||| || || | || |||
Sbjct 17514375 CCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCC 17514316
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| | || ||| || ||||||||| |||||| || || | ||
Sbjct 17514315 TTGTCCTGAATCTTT-GCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGT 17514257
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| ||||| | ||||||||||||||||||||
Sbjct 17514256 AATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || ||||| |||||| || || || || || |
Sbjct 17514672 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCC 17514613
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | || ||||| ||||| || || || || | | |||||||||||| ||
Sbjct 17514612 AAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGG 17514553
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| || | || ||| | ||||||||| |||||| ||
Sbjct 17514552 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCAAC 17514494
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || || || || || || || |||||||| || |||||
Sbjct 17514493 CTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446
>seq5
Length=16150104
Score = 125 bits (138), Expect = 4e-24
Identities = 169/233 (73%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||| | ||||| ||| || || |||||| |||||||| || || |
Sbjct 6389283 CGCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 6389224
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || || ||||||| || ||||| ||||| || ||||| ||||| |||||||| |
Sbjct 6389223 CGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTG 6389164
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | |||||||||||| |||| || | ||| || | || ||||| | ||
Sbjct 6389163 GAATTCCCTCCTTGTCCTGGATC-TTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCG 6389105
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || | |||||| || || || |||| |||||||| || |||||||||||
Sbjct 6389104 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052
>seq3
Length=15215380
Score = 125 bits (138), Expect = 4e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||||||| | || || || |||||||| ||||| ||||||| |
Sbjct 11243711 CCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCA 11243652
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || |||||||| || || || || | || |||||||||||
Sbjct 11243651 AGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCG 11243592
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| ||||| || || || || |||||| ||||| ||
Sbjct 11243591 ATCCCTTCCTTGTCT-TGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAAC 11243533
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | ||| || ||||| || || | ||||||||||| || |||||
Sbjct 11243532 TTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 98.7 bits (108), Expect = 6e-16
Identities = 161/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||||||| | ||| || || |||||||| ||||| ||||| | |
Sbjct 11192533 CCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCA 11192592
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | | || ||||| |||||||||||||| || | | ||| || ||||| |
Sbjct 11192593 AGAGTATGGCCATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGG 11192652
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||||||| |||| || || || | | | ||| |||||| || || ||
Sbjct 11192653 ATTCCTTCCTTGTCTTGGATC-TTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGAC 11192711
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||||| || || || || | || || ||||| || |||||
Sbjct 11192712 CTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758
>seq1
Length=19836964
Score = 113 bits (124), Expect = 3e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || || || |||||| || ||||| ||||| |
Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| | | ||||||| || || || ||||| || || | |||||| || ||||||||
Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| |||||| | || || | || ||||| ||| ||
Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTC-GCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| | ||||||||| || || |||| ||||||||||| || ||||| ||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || || || | ||| ||||| || ||||| ||| || || ||||| || || |
Sbjct 10373739 CCACCCCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCT 10373798
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| | ||||| ||||||||||| |||||||| || | |||||| || || ||
Sbjct 10373799 AGCGTTCGGCCATCTTCTAGTTGTTTACCAGCAAATATCAACCTCTGTTGATCAGGTGGT 10373858
Query 34600 ACTCCCTCCTTGTC 34613
| |||||| |||||
Sbjct 10373859 ATTCCCTCTTTGTC 10373872
>seq762
Length=4953
Score = 86.0 bits (94), Expect = 4e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 34567 CCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGT 34626
|||||||| || || | ||| |||||||| || | ||||||||||||| |||| || |
Sbjct 2 CCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATC-TTCGC 60
Query 34627 TTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAA 34685
|| ||| | || ||||| ||||| || || | ||| ||||| || |||||||
Sbjct 61 CTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAG 120
Query 34686 CGTTTTCACAAAAATCTGCAT 34706
|||||| || || ||||||||
Sbjct 121 CGTTTTGACGAAGATCTGCAT 141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314724011287481
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