Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 seq1 122 8e-23 seq6 118 9e-22 seq762 113 4e-20 seq3 109 5e-19 seq642 100 2e-16 >seq5 Length=16150104 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || ||| | || || ||||| || ||| | || Sbjct 6389054 CATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCCTC 6389113 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | |||||| || || || ||||| || || || ||||| || || Sbjct 6389114 CGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGACCA 6389173 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| ||||| | |||||| ||||| |||||||| | || | |||| ||||| Sbjct 6389174 GCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTACAA 6389233 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| ||||||||||| | ||| |||| | ||| | || |||||| Sbjct 6389234 CATTCAGAAGGAGTCGACGCTGCATCTGGTGCTCCGTCTCCGTGGTGGC 6389282 >seq1 Length=19836964 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || || || || || ||||| Sbjct 7691995 ATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCGTCC 7692054 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || |||||||| ||||| || || || ||||| Sbjct 7692055 GACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAG 7692114 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||||||| | ||| | | ||||||||| Sbjct 7692115 CAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTACAAC 7692174 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || ||||| | ||| || | || || Sbjct 7692175 ATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGG 7692221 >seq6 Length=18523719 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||| || | ||||||||||| || || || Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| ||||| ||||| ||||| || ||||| || ||| Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || ||||| |||| || || || || | |||||||| Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACAAT 17514397 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || | || |||||| | || ||||| || Sbjct 17514398 ATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCGTCTACGTGGTGGTAT 17514447 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||||||| | || || || || |||||| || Sbjct 1438505 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 1438446 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 1438445 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 1438386 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166 ||| | | || | |||||| || || ||||| ||| | ||| | || |||||||||| Sbjct 1438385 CAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGC-CGAACTTTGGCCGATTACAA 1438327 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| || |||||||||||| | ||| | ||| Sbjct 1438326 CATCCAGAAGGAGTCGACCCTTCATCTCGTT 1438296 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || ||| |||| |||||| ||||||| | || || || || Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| ||||| || || || || ||| Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 17514565 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || ||||| | || || || ||| | |||| ||||| Sbjct 17514566 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAAT 17514625 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||||| | ||| | || ||||| Sbjct 17514626 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGG 17514672 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| |||| || || || || ||| || Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || ||||| || || || || || ||||| Sbjct 1443347 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 1443288 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || || ||||||||| | || | ||||||||||| Sbjct 1443287 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAAC 1443228 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || ||||| || ||| | || |||||| Sbjct 1443227 ATCCAGAAGGAATCCACCCTCCACTTGGTT 1443198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27014 CGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAA 27073 ||||||| | || || || || ||||| |||||| | ||||| | || || || Sbjct 1443089 CGGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAA 1443030 Query 27074 AATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACA 27133 ||||||||||| ||||| || ||||| || || |||||| | || | ||| || || || Sbjct 1443029 GATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCA 1442970 Query 27134 ATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTT 27193 | || || || || | | ||||||||||| || || ||||||||| | || || Sbjct 1442969 GCTTGAGGATGGTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTT 1442910 Query 27194 GGTTTTGCGTTTGCGGGGTGGCATAACAAACACTT 27228 ||| | ||| | || |||||| | |||| ||| Sbjct 1442909 GGTCCTCCGTCTCCGTGGTGGCTTCTGAAACTCTT 1442875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || ||||| | || ||| | || || || || Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | |||||| | ||| | | ||||||||| Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | || | ||| | || ||||| || Sbjct 17514170 ATCCAAAAGGAGTCTACGCTCCATCTTGTGCTACGTCTCCGTGGTGGTAT 17514219 >seq762 Length=4953 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||||||| | || || || || |||||| || Sbjct 369 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 310 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 309 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 250 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166 ||| | | || | |||||| || || ||||| ||| | ||| | || |||||||||| Sbjct 249 CAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGC-CGAACTTTGGCCGATTACAA 191 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| || |||||||||||| | ||| | ||| Sbjct 190 CATCCAGAAGGAGTCGACCCTTCATCTCGTT 160 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| | || || || || ||||| |||||| | ||||| | || || || Sbjct 4953 GGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAG 4894 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||||||||| ||||| || ||||| || || |||||| | || | ||| || || || Sbjct 4893 ATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAG 4834 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | || || || || | | ||||||||||| || || ||||||||| | || ||| Sbjct 4833 CTTGAGGATGGTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTTG 4774 Query 27195 GTTTTGCGTTTGCGGGGTGGCATAACAAACACTT 27228 || | ||| | || |||||| | |||| ||| Sbjct 4773 GTCCTCCGTCTCCGTGGTGGCTTCTGAAACTCTT 4740 >seq3 Length=15215380 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| ||||| || || ||||| | ||||| || ||||| || || Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||| | || || ||| ||||||||||| ||||| || | || || ||| Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCAA 11243604 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || ||||| | || || || ||| || | ||||||||| Sbjct 11243605 TAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAAC 11243664 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || | || |||||| | || ||||| || Sbjct 11243665 ATCCAAAAGGAATCAACACTTCACCTTGTGTTGCGTCTTCGTGGTGGGAT 11243714 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | || |||||||| || ||| || Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||| | || || || |||||||| ||||||||||| | ||| || || Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCAAGATAAAGAAGGCATCCAACCGGACCAG 11243832 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT-TCGACCGTTTCCGATTACAA 27166 ||| | |||| | ||||| || || | ||||| || |||| | | ||||| || Sbjct 11243833 CAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATAA 11243892 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||| || | || | ||| | ||| | || ||||| Sbjct 11243893 CATTCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGTCTCCGTGGTGG 11243940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || |||||| | || |||||||| || ||| || Sbjct 11192758 ATGCA-ATCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTCA 11192700 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||| || || |||||||| ||||| || | || || || Sbjct 11192699 GACACCATTGACAACATCAAGACCAAGATCCAAGACAAGGAAGGAATCCTTCCGGAACAG 11192640 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| | || || | || || | ||||||||| Sbjct 11192639 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTGCGGATTACAAC 11192580 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | ||| | || |||||| | || ||||| || Sbjct 11192579 ATCCAAAAGGAATCAACACTTCATCTTGTGTTGCGTCTTCGTGGTGGGAT 11192530 >seq642 Length=6837 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| |||| || || || || ||| || Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || ||||| || || || || || ||||| Sbjct 308 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 249 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || || ||||||||| | || | ||||||||||| Sbjct 248 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAAC 189 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || ||||| || ||| | || |||||| Sbjct 188 ATCCAGAAGGAATCCACCCTCCACTTGGTT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910479048640