Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 1e-27
seq1 122 8e-23
seq6 118 9e-22
seq762 113 4e-20
seq3 109 5e-19
seq642 100 2e-16
>seq5
Length=16150104
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || ||||| || || || ||| | || || ||||| || ||| | ||
Sbjct 6389054 CATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCCTC 6389113
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || || | |||||| || || || ||||| || || || ||||| || ||
Sbjct 6389114 CGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGACCA 6389173
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| ||||| | |||||| ||||| |||||||| | || | |||| |||||
Sbjct 6389174 GCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTACAA 6389233
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||| ||||||||||| | ||| |||| | ||| | || ||||||
Sbjct 6389234 CATTCAGAAGGAGTCGACGCTGCATCTGGTGCTCCGTCTCCGTGGTGGC 6389282
>seq1
Length=19836964
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| ||||| || || || ||| | || || || || || || |||||
Sbjct 7691995 ATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCGTCC 7692054
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || || |||||||| ||||| || || || |||||
Sbjct 7692055 GACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAG 7692114
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| || || |||||||| | ||| | | |||||||||
Sbjct 7692115 CAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTACAAC 7692174
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | || ||||| | ||| || | || ||
Sbjct 7692175 ATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGG 7692221
>seq6
Length=18523719
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || ||||| || | ||||||||||| || || ||
Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| ||| ||||| ||||| ||||| || ||||| || |||
Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | ||| || ||||| |||| || || || || | ||||||||
Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACAAT 17514397
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||| || ||| | || | || |||||| | || ||||| ||
Sbjct 17514398 ATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCGTCTACGTGGTGGTAT 17514447
Score = 113 bits (124), Expect = 4e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| ||||||||| | || || || || |||||| ||
Sbjct 1438505 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 1438446
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| || || || || || ||||| || || || |||||
Sbjct 1438445 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 1438386
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166
||| | | || | |||||| || || ||||| ||| | ||| | || ||||||||||
Sbjct 1438385 CAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGC-CGAACTTTGGCCGATTACAA 1438327
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
||| || |||||||||||| | ||| | |||
Sbjct 1438326 CATCCAGAAGGAGTCGACCCTTCATCTCGTT 1438296
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| || ||| |||| |||||| ||||||| | || || || ||
Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || ||||| ||||| ||||| || || || || |||
Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 17514565
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | ||| || ||||| | || || || ||| | |||| |||||
Sbjct 17514566 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAAT 17514625
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | || |||||| | ||| | || |||||
Sbjct 17514626 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGG 17514672
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| ||||| ||| |||| || || || || ||| ||
Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| || || || ||||| || || || || || |||||
Sbjct 1443347 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 1443288
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | |||||| || || ||||||||| | || | |||||||||||
Sbjct 1443287 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAAC 1443228
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
|| || ||||| || ||| | || ||||||
Sbjct 1443227 ATCCAGAAGGAATCCACCCTCCACTTGGTT 1443198
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27014 CGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAA 27073
||||||| | || || || || ||||| |||||| | ||||| | || || ||
Sbjct 1443089 CGGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAA 1443030
Query 27074 AATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACA 27133
||||||||||| ||||| || ||||| || || |||||| | || | ||| || || ||
Sbjct 1443029 GATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCA 1442970
Query 27134 ATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTT 27193
| || || || || | | ||||||||||| || || ||||||||| | || ||
Sbjct 1442969 GCTTGAGGATGGTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTT 1442910
Query 27194 GGTTTTGCGTTTGCGGGGTGGCATAACAAACACTT 27228
||| | ||| | || |||||| | |||| |||
Sbjct 1442909 GGTCCTCCGTCTCCGTGGTGGCTTCTGAAACTCTT 1442875
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || || ||||| | || ||| | || || || ||
Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || || ||||| | |||||| | ||| | | |||||||||
Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | ||| | || | ||| | || ||||| ||
Sbjct 17514170 ATCCAAAAGGAGTCTACGCTCCATCTTGTGCTACGTCTCCGTGGTGGTAT 17514219
>seq762
Length=4953
Score = 113 bits (124), Expect = 4e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| ||||||||| | || || || || |||||| ||
Sbjct 369 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 310
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| || || || || || ||||| || || || |||||
Sbjct 309 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 250
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166
||| | | || | |||||| || || ||||| ||| | ||| | || ||||||||||
Sbjct 249 CAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGC-CGAACTTTGGCCGATTACAA 191
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
||| || |||||||||||| | ||| | |||
Sbjct 190 CATCCAGAAGGAGTCGACCCTTCATCTCGTT 160
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074
|||||| | || || || || ||||| |||||| | ||||| | || || ||
Sbjct 4953 GGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAG 4894
Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134
||||||||||| ||||| || ||||| || || |||||| | || | ||| || || ||
Sbjct 4893 ATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAG 4834
Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194
| || || || || | | ||||||||||| || || ||||||||| | || |||
Sbjct 4833 CTTGAGGATGGTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTTG 4774
Query 27195 GTTTTGCGTTTGCGGGGTGGCATAACAAACACTT 27228
|| | ||| | || |||||| | |||| |||
Sbjct 4773 GTCCTCCGTCTCCGTGGTGGCTTCTGAAACTCTT 4740
>seq3
Length=15215380
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| ||||| || || ||||| | ||||| || ||||| || ||
Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | |||| | || || ||| ||||||||||| ||||| || | || || |||
Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCAA 11243604
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | || || | ||| || ||||| | || || || ||| || | |||||||||
Sbjct 11243605 TAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAAC 11243664
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || || | || | || |||||| | || ||||| ||
Sbjct 11243665 ATCCAAAAGGAATCAACACTTCACCTTGTGTTGCGTCTTCGTGGTGGGAT 11243714
Score = 102 bits (112), Expect = 7e-17
Identities = 160/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| |||| || ||| | || |||||||| || ||| ||
Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| |||||| | || || || |||||||| ||||||||||| | ||| || ||
Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCAAGATAAAGAAGGCATCCAACCGGACCAG 11243832
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT-TCGACCGTTTCCGATTACAA 27166
||| | |||| | ||||| || || | ||||| || |||| | | ||||| ||
Sbjct 11243833 CAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATAA 11243892
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||| || ||||| || | || | ||| | ||| | || |||||
Sbjct 11243893 CATTCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGTCTCCGTGGTGG 11243940
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| || |||||| | || |||||||| || ||| ||
Sbjct 11192758 ATGCA-ATCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTCA 11192700
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | |||| || || |||||||| ||||| || | || || ||
Sbjct 11192699 GACACCATTGACAACATCAAGACCAAGATCCAAGACAAGGAAGGAATCCTTCCGGAACAG 11192640
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | ||||| ||||| | || || | || || | |||||||||
Sbjct 11192639 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTGCGGATTACAAC 11192580
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || || | ||| | || |||||| | || ||||| ||
Sbjct 11192579 ATCCAAAAGGAATCAACACTTCATCTTGTGTTGCGTCTTCGTGGTGGGAT 11192530
>seq642
Length=6837
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| ||||| ||| |||| || || || || ||| ||
Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| || || || ||||| || || || || || |||||
Sbjct 308 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 249
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | |||||| || || ||||||||| | || | |||||||||||
Sbjct 248 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAAC 189
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
|| || ||||| || ||| | || ||||||
Sbjct 188 ATCCAGAAGGAATCCACCCTCCACTTGGTT 159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434910479048640
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