Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq3 210 3e-49 seq7 104 3e-17 >seq3 Length=15215380 Score = 210 bits (232), Expect = 3e-49 Identities = 309/436 (71%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 |||||||| ||||| || |||| | ||||| ||| |||| || || || || ||| ||| Sbjct 10486975 TATATGAAATTCTAACAACATCATGGCATGCTCAATTATCTCTTAACCTAGCTATGTTAG 10486916 Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908 | ||| | | || | || | || ||||| ||| | ||||| |||||||||||||| | Sbjct 10486915 GCTCTTTAACCATTGTTGTAGCTCACCATATATATTCCATGCCCCCTTATCCATATCTAG 10486856 Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968 || ||| ||| | ||| | | ||| ||||| ||||| | |||||| ||||| ||| Sbjct 10486855 CTACTGACTATGCTACACAACTGTCATTGTTCACACATCACAAGTGGATTGGTGGATTTA 10486796 Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTG 184025 | || || ||||| | || ||||| | ||| |||| || |||||||| ||| || Sbjct 10486795 TCATAGTTGGTGCTGCTGCGCATGCAGCCATTTTTATGGTACGAGACTATGATCCAACTA 10486736 Query 184026 TTCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTC 184085 || | | | | || |||||||| | | || | | | ||||||||||| | Sbjct 10486735 ATCGATACAACG---ATTTATTAGATCGTGTCCTGAGGCATCGCGATGCAATCATATCAC 10486679 Query 184086 ACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATG 184145 | | ||||||||||| || ||| | || ||||| ||||||||| | |||||||| |||| Sbjct 10486678 ATCTCAACTGGGTATGTATATTTCTTGGCTTTCACAGTTTTGGTTTGTATATTCATAATG 10486619 Query 184146 ATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTAC 184205 ||| ||||| || || || | || | ||| | || ||||| || |||||||||| Sbjct 10486618 ATACCATGAGTGCTTTAGGGCGTCCACAAGATATGTTTTCAGATACTGCTATACAATTAC 10486559 Query 184206 AACCTGTATTTGCACA 184221 |||| || ||||| || Sbjct 10486558 AACCAGTCTTTGCTCA 10486543 Score = 104 bits (114), Expect = 3e-17 Identities = 190/274 (69%), Gaps = 7/274 (3%) Strand=Plus/Minus Query 183111 TGAATGGAGATCAGGGTGCAGGATATCAAGGTATTAGAATTACATCTGGTTTATTTCAGA 183170 ||||||||||| ||| | ||| | | ||| || ||| || ||||| || ||||||| Sbjct 10516370 TGAATGGAGATGTGGGCGGAGGCTTCCGAGGAATACAAATAACCTCTGGCTTTTTTCAGA 10516311 Query 183171 TGTGGAGAGCATGGGGTATAACAAATGAAACTCAACTA-ATGGCGCTAGCACTAGGTGCT 183229 | ||| |||||| || ||||| | |||| ||||| || | | ||| | || || Sbjct 10516310 TTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACC-GCAATTGGCGCA 10516252 Query 183230 TTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCATTTCATTTTCACGTTGCTGCTCCT 183289 || || | ||||| | ||| || ||||||| || |||| |||| || |||| Sbjct 10516251 TTGGTCTTCGCAGCCTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCAGCTCAA 10516192 Query 183290 AAGTTATCATGGTTTCAGAATGTAGAATCTATGATGAATCATCA---CCTT--GCAGGTT 183344 || || | ||||| || |||||||||||||| |||||||||| | || ||||| Sbjct 10516191 AAATTGGCTTGGTTCCAAGATGTAGAATCTATGTTGAATCATCATTTCATTTAGCAGGGC 10516132 Query 183345 TGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACA 183378 | || || ||||| || | ||||||||||| Sbjct 10516131 TACTAGGACTTGGGTCCCTTTCTTGGGCAGGACA 10516098 >seq7 Length=17055980 Score = 104 bits (114), Expect = 3e-17 Identities = 110/143 (77%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 184458 TCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTAT 184517 |||||| ||||| | ||| |||||||| || ||||| ||||| | ||||||||||| | Sbjct 6231292 TCCCTTCTGATGA-CTTGGAAGAGGAGGAACATGTCAAGTATCTGCTTGGGATCATGTCT 6231350 Query 184518 TCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGA 184577 | | || ||||||||||||| ||| || || ||||||| ||||| || ||||||| Sbjct 6231351 TGTTAGGACTATTCTGGATGTACAATGCTATTTCCGTAGTAATATTCCATTTCAGTTGGA 6231410 Query 184578 GAATGCA---AGATGTATGGGGT 184597 |||||| |||||| || ||| Sbjct 6231411 AAATGCAGTCAGATGTTTGAGGT 6231433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631415700132120