Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_028955.1
Length=197361
Score E
Sequences producing significant alignments: (Bits) Value
seq3 210 3e-49
seq7 104 3e-17
>seq3
Length=15215380
Score = 210 bits (232), Expect = 3e-49
Identities = 309/436 (71%), Gaps = 6/436 (1%)
Strand=Plus/Minus
Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848
|||||||| ||||| || |||| | ||||| ||| |||| || || || || ||| |||
Sbjct 10486975 TATATGAAATTCTAACAACATCATGGCATGCTCAATTATCTCTTAACCTAGCTATGTTAG 10486916
Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908
| ||| | | || | || | || ||||| ||| | ||||| |||||||||||||| |
Sbjct 10486915 GCTCTTTAACCATTGTTGTAGCTCACCATATATATTCCATGCCCCCTTATCCATATCTAG 10486856
Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968
|| ||| ||| | ||| | | ||| ||||| ||||| | |||||| ||||| |||
Sbjct 10486855 CTACTGACTATGCTACACAACTGTCATTGTTCACACATCACAAGTGGATTGGTGGATTTA 10486796
Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTG 184025
| || || ||||| | || ||||| | ||| |||| || |||||||| ||| ||
Sbjct 10486795 TCATAGTTGGTGCTGCTGCGCATGCAGCCATTTTTATGGTACGAGACTATGATCCAACTA 10486736
Query 184026 TTCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTC 184085
|| | | | | || |||||||| | | || | | | ||||||||||| |
Sbjct 10486735 ATCGATACAACG---ATTTATTAGATCGTGTCCTGAGGCATCGCGATGCAATCATATCAC 10486679
Query 184086 ACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATG 184145
| | ||||||||||| || ||| | || ||||| ||||||||| | |||||||| ||||
Sbjct 10486678 ATCTCAACTGGGTATGTATATTTCTTGGCTTTCACAGTTTTGGTTTGTATATTCATAATG 10486619
Query 184146 ATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTAC 184205
||| ||||| || || || | || | ||| | || ||||| || ||||||||||
Sbjct 10486618 ATACCATGAGTGCTTTAGGGCGTCCACAAGATATGTTTTCAGATACTGCTATACAATTAC 10486559
Query 184206 AACCTGTATTTGCACA 184221
|||| || ||||| ||
Sbjct 10486558 AACCAGTCTTTGCTCA 10486543
Score = 104 bits (114), Expect = 3e-17
Identities = 190/274 (69%), Gaps = 7/274 (3%)
Strand=Plus/Minus
Query 183111 TGAATGGAGATCAGGGTGCAGGATATCAAGGTATTAGAATTACATCTGGTTTATTTCAGA 183170
||||||||||| ||| | ||| | | ||| || ||| || ||||| || |||||||
Sbjct 10516370 TGAATGGAGATGTGGGCGGAGGCTTCCGAGGAATACAAATAACCTCTGGCTTTTTTCAGA 10516311
Query 183171 TGTGGAGAGCATGGGGTATAACAAATGAAACTCAACTA-ATGGCGCTAGCACTAGGTGCT 183229
| ||| |||||| || ||||| | |||| ||||| || | | ||| | || ||
Sbjct 10516310 TTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACC-GCAATTGGCGCA 10516252
Query 183230 TTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCATTTCATTTTCACGTTGCTGCTCCT 183289
|| || | ||||| | ||| || ||||||| || |||| |||| || ||||
Sbjct 10516251 TTGGTCTTCGCAGCCTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCAGCTCAA 10516192
Query 183290 AAGTTATCATGGTTTCAGAATGTAGAATCTATGATGAATCATCA---CCTT--GCAGGTT 183344
|| || | ||||| || |||||||||||||| |||||||||| | || |||||
Sbjct 10516191 AAATTGGCTTGGTTCCAAGATGTAGAATCTATGTTGAATCATCATTTCATTTAGCAGGGC 10516132
Query 183345 TGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACA 183378
| || || ||||| || | |||||||||||
Sbjct 10516131 TACTAGGACTTGGGTCCCTTTCTTGGGCAGGACA 10516098
>seq7
Length=17055980
Score = 104 bits (114), Expect = 3e-17
Identities = 110/143 (77%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 184458 TCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTAT 184517
|||||| ||||| | ||| |||||||| || ||||| ||||| | ||||||||||| |
Sbjct 6231292 TCCCTTCTGATGA-CTTGGAAGAGGAGGAACATGTCAAGTATCTGCTTGGGATCATGTCT 6231350
Query 184518 TCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGA 184577
| | || ||||||||||||| ||| || || ||||||| ||||| || |||||||
Sbjct 6231351 TGTTAGGACTATTCTGGATGTACAATGCTATTTCCGTAGTAATATTCCATTTCAGTTGGA 6231410
Query 184578 GAATGCA---AGATGTATGGGGT 184597
|||||| |||||| || |||
Sbjct 6231411 AAATGCAGTCAGATGTTTGAGGT 6231433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631415700132120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |