Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq642 84.2 2e-11 seq6 84.2 2e-11 >seq642 Length=6837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||||| || ||||| ||| || | || || |||||| | Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || ||||| || ||| |||| ||| | Sbjct 308 GACACCATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 251 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || || |||||||| || ||||| |||| || | ||| ||||||||| Sbjct 250 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 191 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||| || || ||| | || |||||| Sbjct 190 ACATCCAGAAGGAATCCACCCTCCACTTGGTT 159 >seq6 Length=18523719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||||| || ||||| ||| || | || || |||||| | Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || ||||| || ||| |||| ||| | Sbjct 1443347 GACACCATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 1443290 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || || |||||||| || ||||| |||| || | ||| ||||||||| Sbjct 1443289 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 1443230 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||| || || ||| | || |||||| Sbjct 1443229 ACATCCAGAAGGAATCCACCCTCCACTTGGTT 1443198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355856080884639