Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq642 84.2 2e-11
seq6 84.2 2e-11
>seq642
Length=6837
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || ||||| || ||||| ||| || | || || |||||| |
Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || |||| || ||| || || ||||| || ||| |||| ||| |
Sbjct 308 GACACCATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 251
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || || |||||||| || ||||| |||| || | ||| |||||||||
Sbjct 250 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 191
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999
||||||| || || ||| | || ||||||
Sbjct 190 ACATCCAGAAGGAATCCACCCTCCACTTGGTT 159
>seq6
Length=18523719
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || ||||| || ||||| ||| || | || || |||||| |
Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || |||| || ||| || || ||||| || ||| |||| ||| |
Sbjct 1443347 GACACCATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 1443290
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || || |||||||| || ||||| |||| || | ||| |||||||||
Sbjct 1443289 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 1443230
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999
||||||| || || ||| | || ||||||
Sbjct 1443229 ACATCCAGAAGGAATCCACCCTCCACTTGGTT 1443198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355856080884639
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |