Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq1 105 5e-18 seq642 104 2e-17 seq3 104 2e-17 seq762 98.7 7e-16 seq4 89.7 3e-13 >seq6 Length=18523719 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||||||||| ||||| |||||| | || ||||| | Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || ||||| || Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| || ||||||| |||||| | | ||||||||| Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 17514170 ATCCAAAAGGAGTCTAC 17514186 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||| || || || ||||| ||||| ||||| | | Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | ||||| || ||| | || || ||||| Sbjct 1443347 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 1443289 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| || || ||||||||| || ||||| | ||||||||| Sbjct 1443288 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 1443229 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || ||||| | || || ||| Sbjct 1443228 CATCCAGAAGGAATCCACCCTCCACTTGGTT 1443198 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| ||||| || || | | Sbjct 1438505 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 1438446 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | || || |||||| | || || ||||| Sbjct 1438445 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGATAAGGAAGGTATTCCTCCGGATCA 1438387 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || |||| |||| || ||||| | ||||||||| Sbjct 1438386 GCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACAA 1438327 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | ||| | ||| | || || || Sbjct 1438326 CATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCAGGCTCCGTGGTGG 1438279 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| || || ||||| || ||||| || ||||| | | Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| ||||| ||||| | || ||||| ||| Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || ||||| ||||| || | ||||| | | |||||||| Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACAAT 17514397 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 17514398 ATCCAGAAGGAATCAAC 17514414 >seq1 Length=19836964 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || |||||||| ||||| || ||||| || || || ||||| || Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | ||||| || Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGA-TCCAAGACAAGGAAGGGATCCCGCCGGA 7692110 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || |||||||||| | || | | ||||| Sbjct 7692111 TCAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTA 7692170 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || ||||| || | || || || | | || |||||||| Sbjct 7692171 CAACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGGA 7692222 >seq642 Length=6837 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||| || || || ||||| ||||| ||||| | | Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | ||||| || ||| | || || ||||| Sbjct 308 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 250 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| || || ||||||||| || ||||| | ||||||||| Sbjct 249 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 190 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || ||||| | || || ||| Sbjct 189 CATCCAGAAGGAATCCACCCTCCACTTGGTT 159 >seq3 Length=15215380 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| || ||||| || || ||||||||||| | Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||||||| ||| | || || ||| ||| ||||| ||||| | |||| || || Sbjct 11243545 GACACTGTTGATAATGTAAAGAC-AAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCA 11243603 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | || | || || || || || ||||| || || || | ||||| | | |||||||| Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| ||||| || || ||| Sbjct 11243664 CATCCAAAAGGAATCAACA 11243682 >seq762 Length=4953 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| ||||| || || | | Sbjct 369 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 310 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | || || |||||| | || || ||||| Sbjct 309 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGATAAGGAAGGTATTCCTCCGGATCA 251 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || |||| |||| || ||||| | ||||||||| Sbjct 250 GCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACAA 191 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | ||| | ||| | || || || Sbjct 190 CATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCAGGCTCCGTGGTGG 143 >seq4 Length=14320061 Score = 89.7 bits (98), Expect = 3e-13 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 23705 ACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAG 23764 ||||||||||| |||| ||||||||||| | | |||||||| || || ||||| |||| Sbjct 10684939 ACAAAGAAGGTATACCACCAGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAAG 10684880 Query 23765 ACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAA 23824 | | || || ||| ||||||||||| || |||||||| || | || | || || | Sbjct 10684879 ATGGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTGGTCTTGA 10684820 Query 23825 GGTTGCGAGGAGGATCAGCA-GTTAAAGATGAA 23856 || | |||| ||| | || | ||||| |||| Sbjct 10684819 GGCTTAGAGGTGGA--ACCATGATAAAGGTGAA 10684789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003597900156