Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 136 6e-27 seq4 96.9 5e-15 seq7 84.2 3e-11 >seq2 Length=13294645 Score = 136 bits (150), Expect = 6e-27 Identities = 391/594 (66%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| ||||| | |||||| |||| || || ||||| || || || | Sbjct 9186729 CACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAAT 9186670 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| || || |||||||| ||||| || || | || ||| | || || ||||| Sbjct 9186669 CCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGAGAAGAA 9186611 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| ||| ||||| ||||| | |||||| | || ||| ||| || Sbjct 9186610 GATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGATCC--ATCG 9186553 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||| | || || || || ||||| || ||||| || || Sbjct 9186552 ATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGG 9186493 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || | | || | | || || | || || || | | ||||| ||||| Sbjct 9186492 AAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATC 9186433 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||| ||||| || ||||| || ||||| ||| | || || | | Sbjct 9186432 TCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 9186373 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| |||||| || | |||||| || ||||| || || || Sbjct 9186372 TGCACATCGG-ACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGC 9186314 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 || || || | ||| ||||| || || | | ||| || | || || | |||||| Sbjct 9186313 GAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTC 9186254 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 |||| || | ||| |||||||| || |||||||| || || || || || || Sbjct 9186253 GCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTT 9186194 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||||| | ||| || | | ||||||||||| || ||| ||||| | ||| Sbjct 9186193 GTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTGG 9186140 >seq4 Length=14320061 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||||||||| || | |||||||||||||||||||||||| | | || | | || Sbjct 320827 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 320768 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||| | || || | | ||||| | || || || ||||| || | ||||| Sbjct 320767 GTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCAACCCTCATCAG 320708 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | | |||||| | ||| ||| | || | Sbjct 320707 CATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTAAGATCTCTCAAG 320648 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| || | ||| ||| || | |||||||| || Sbjct 320647 TGTTTTAAATCCAAAGTAATCATATTCAAAATCACGGTCGTAAATGAT 320600 >seq7 Length=17055980 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | ||| || | || ||||| ||||||||||||||| | ||| | || || Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| || | | || |||||| | ||| ||||| || |||| || | ||||| Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404 Query 77113 CATATGCTGAGGTCGTTCTA-CAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| |||||||| | ||| | || | || | | | ||| || | ||||||||| || | Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCACTTTTCCT-TGGAGTTTTAAGAGGTATGATTTCTCAA 15540345 Query 77172 AAGTTTTAAAACCAAAATA 77190 |||||| || ||||| || Sbjct 15540344 GAGTTTTGAATCCAAAGTA 15540326 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| | ||||| || |||||| ||||| | | ||||||| || || | Sbjct 15542654 CAAGACTCTGCGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAG 15542595 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 |||||| ||||||||||| ||||| ||||| |||| | | |||||||| |||| Sbjct 15542594 AATTTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACCAGAAGAGAATTTCTGATTCCATT 15542535 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || || ||||| | ||| ||| ||||| | | || || | |||| ||| Sbjct 15542534 CTTTGAAATAATATCTCTGAGAGCAGCCCAGTCCCAGCGGTTCGAAGGAATTACATTCCA 15542475 Query 75916 GAGATCGTATTGTAGAATTCC 75936 | ||| ||| |||||||| Sbjct 15542474 CATATCAGGTTGAAGAATTCC 15542454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921415682240