Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 6e-27
seq4 96.9 5e-15
seq7 84.2 3e-11
>seq2
Length=13294645
Score = 136 bits (150), Expect = 6e-27
Identities = 391/594 (66%), Gaps = 8/594 (1%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| || ||||| ||||| | |||||| |||| || || ||||| || || || |
Sbjct 9186729 CACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAAT 9186670
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748
|| ||||| || || |||||||| ||||| || || | || ||| | || || |||||
Sbjct 9186669 CCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGAGAAGAA 9186611
Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806
|| ||||| ||| ||||| ||||| | |||||| | || ||| ||| ||
Sbjct 9186610 GATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGATCC--ATCG 9186553
Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866
|||||| | ||||| | || || || || ||||| || ||||| || ||
Sbjct 9186552 ATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGG 9186493
Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926
|||||| || | | || | | || || | || || || | | ||||| |||||
Sbjct 9186492 AAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATC 9186433
Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986
|| || || ||||| ||||| || ||||| || ||||| ||| | || || | |
Sbjct 9186432 TCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 9186373
Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045
|| || || | ||| |||||| || | |||||| || ||||| || || ||
Sbjct 9186372 TGCACATCGG-ACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGC 9186314
Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105
|| || || | ||| ||||| || || | | ||| || | || || | ||||||
Sbjct 9186313 GAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTC 9186254
Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165
|||| || | ||| |||||||| || |||||||| || || || || || ||
Sbjct 9186253 GCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTT 9186194
Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219
||||| | ||| || | | ||||||||||| || ||| ||||| | |||
Sbjct 9186193 GTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTGG 9186140
>seq4
Length=14320061
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||||||||| || | |||||||||||||||||||||||| | | || | | ||
Sbjct 320827 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 320768
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|||||| | || || | | ||||| | || || || ||||| || | |||||
Sbjct 320767 GTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGCAACCCTCATCAG 320708
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
||| || ||||| | ||| ||| || | | |||||| | ||| ||| | || |
Sbjct 320707 CATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTAAGATCTCTCAAG 320648
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|||||||| ||||| || | ||| ||| || | |||||||| ||
Sbjct 320647 TGTTTTAAATCCAAAGTAATCATATTCAAAATCACGGTCGTAAATGAT 320600
>seq7
Length=17055980
Score = 84.2 bits (92), Expect = 3e-11
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
||||| | ||| || | || ||||| ||||||||||||||| | ||| | || ||
Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463
Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112
|| |||| || | | || |||||| | ||| ||||| || |||| || | |||||
Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404
Query 77113 CATATGCTGAGGTCGTTCTA-CAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
||| |||||||| | ||| | || | || | | | ||| || | ||||||||| || |
Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCACTTTTCCT-TGGAGTTTTAAGAGGTATGATTTCTCAA 15540345
Query 77172 AAGTTTTAAAACCAAAATA 77190
|||||| || ||||| ||
Sbjct 15540344 GAGTTTTGAATCCAAAGTA 15540326
Score = 84.2 bits (92), Expect = 3e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795
||| ||||| ||| | ||||| || |||||| ||||| | | ||||||| || || |
Sbjct 15542654 CAAGACTCTGCGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAG 15542595
Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855
|||||| ||||||||||| ||||| ||||| |||| | | |||||||| ||||
Sbjct 15542594 AATTTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACCAGAAGAGAATTTCTGATTCCATT 15542535
Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915
|| || ||||| | ||| ||| ||||| | | || || | |||| |||
Sbjct 15542534 CTTTGAAATAATATCTCTGAGAGCAGCCCAGTCCCAGCGGTTCGAAGGAATTACATTCCA 15542475
Query 75916 GAGATCGTATTGTAGAATTCC 75936
| ||| ||| ||||||||
Sbjct 15542474 CATATCAGGTTGAAGAATTCC 15542454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712921415682240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |