Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 seq1 87.8 2e-12 >seq5 Length=16150104 Score = 91.5 bits (100), Expect = 2e-13 Identities = 226/341 (66%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 165664 TCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCT 165723 |||||| ||| | || |||| |||| || ||| | |||||| | || || ||||| Sbjct 10049270 TCCAAGTGTTTTAAAATTGGATATTGAACCCATTTTATATGATGAGAGTCGCCGGTATAC 10049329 Query 165724 TAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 165783 | |||| || || || | | |||||||||| || ||| | || ||| ||| || Sbjct 10049330 TGGGCGCTGCTTTTCTATGCACTATTCATGGTGCTATTGTAAAATATCTTTTATATAAAA 10049389 Query 165784 ATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATT 165843 ||||| | ||||| || || | || ||| ||| | ||| | || |||||||||| Sbjct 10049390 ATGGTAATGGTGCAAATACATTAGATGCTTTTAATACAAATCAAGTCGAAGAAACTTATT 10049449 Query 165844 CCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGC 165903 | ||| |||| || ||| | || | || || || ||||| |||| || ||||| Sbjct 10049450 CAATGTTCACCGCAAACTGCTTTTTATCACAAATATTTGGGGTTGCGTTTTCCAATAGAA 10049509 Query 165904 GTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTG 165963 || | | | || |||||| | ||||| | ||| || | | || | ||| || ||| Sbjct 10049510 GTCAG--TTATTTATTTATGTTATTTGTACTTGTAATTGATATGTGTATGAGTGCTCTTG 10049567 Query 165964 GTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTT 166004 | | | | ||| || | || || ||||| |||| |||| Sbjct 10049568 G-AGTAGTCTTCTAGCTTTTAACCTACGTGCCTATGGTTTT 10049607 >seq1 Length=19836964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| ||||||||| ||| | || ||||| || |||||||| ||| | || | || Sbjct 3424997 GTGCGAAGACGACGTCTACGTCCTCGACGCTGCGGAGGAAGCCGGTATCGATTTGCCTTA 3425056 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || ||||| || ||| |||||||||| || | || Sbjct 3425057 CTCTTGCCGTGCCGGATCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGATCCATTGA 3425116 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| |||| | ||||||||||| || || || | | || || || Sbjct 3425117 CCAGTCGGACCAGAGCTTCTTAGACGATGACCAGATGAATGACGGCTATGTCCTCACCTG 3425176 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGA 161766 ||| |||| || || ||| || ||||| || | |||||||| Sbjct 3425177 TGTGGCTTACCCGACTTCTGATGTCGTCATTGAAACCCACAAAGAAGA 3425224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557644243719240