Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq5 91.5 2e-13
seq1 87.8 2e-12
>seq5
Length=16150104
Score = 91.5 bits (100), Expect = 2e-13
Identities = 226/341 (66%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 165664 TCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCT 165723
|||||| ||| | || |||| |||| || ||| | |||||| | || || |||||
Sbjct 10049270 TCCAAGTGTTTTAAAATTGGATATTGAACCCATTTTATATGATGAGAGTCGCCGGTATAC 10049329
Query 165724 TAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 165783
| |||| || || || | | |||||||||| || ||| | || ||| ||| ||
Sbjct 10049330 TGGGCGCTGCTTTTCTATGCACTATTCATGGTGCTATTGTAAAATATCTTTTATATAAAA 10049389
Query 165784 ATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATT 165843
||||| | ||||| || || | || ||| ||| | ||| | || ||||||||||
Sbjct 10049390 ATGGTAATGGTGCAAATACATTAGATGCTTTTAATACAAATCAAGTCGAAGAAACTTATT 10049449
Query 165844 CCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGC 165903
| ||| |||| || ||| | || | || || || ||||| |||| || |||||
Sbjct 10049450 CAATGTTCACCGCAAACTGCTTTTTATCACAAATATTTGGGGTTGCGTTTTCCAATAGAA 10049509
Query 165904 GTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTG 165963
|| | | | || |||||| | ||||| | ||| || | | || | ||| || |||
Sbjct 10049510 GTCAG--TTATTTATTTATGTTATTTGTACTTGTAATTGATATGTGTATGAGTGCTCTTG 10049567
Query 165964 GTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTT 166004
| | | | ||| || | || || ||||| |||| ||||
Sbjct 10049568 G-AGTAGTCTTCTAGCTTTTAACCTACGTGCCTATGGTTTT 10049607
>seq1
Length=19836964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598
||| ||||||||| ||| | || ||||| || |||||||| ||| | || | ||
Sbjct 3424997 GTGCGAAGACGACGTCTACGTCCTCGACGCTGCGGAGGAAGCCGGTATCGATTTGCCTTA 3425056
Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658
||| || ||||| || |||| || ||||| || ||| |||||||||| || | ||
Sbjct 3425057 CTCTTGCCGTGCCGGATCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGATCCATTGA 3425116
Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718
||| |||||| |||| | ||||||||||| || || || | | || || ||
Sbjct 3425117 CCAGTCGGACCAGAGCTTCTTAGACGATGACCAGATGAATGACGGCTATGTCCTCACCTG 3425176
Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGA 161766
||| |||| || || ||| || ||||| || | ||||||||
Sbjct 3425177 TGTGGCTTACCCGACTTCTGATGTCGTCATTGAAACCCACAAAGAAGA 3425224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557644243719240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |