Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 172 4e-38 seq4 150 1e-31 seq5 149 5e-31 seq762 140 2e-28 seq6 140 2e-28 seq642 127 1e-24 seq3 98.7 7e-16 >seq1 Length=19836964 Score = 172 bits (190), Expect = 4e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| |||||||| | | |||| ||||||||| |||||| |||||||||||||| || Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 |||| | | |||| ||||||||||||||||| || |||| |||||||||||| | || Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | |||||||| || |||||| ||||| | | || ||||||| || || || Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995 >seq4 Length=14320061 Score = 150 bits (166), Expect = 1e-31 Identities = 161/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||| ||||||||||| |||||||| ||| |||| || Sbjct 6306127 ACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCG 6306186 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| |||||||| || | ||| | |||||||| ||| Sbjct 6306187 AGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 6306246 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| ||| || ||||| | ||||| |||| Sbjct 6306247 ATCTTGGCCTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCT 6306304 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || ||||| ||||||||||| ||||| Sbjct 6306305 TCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| ||||| || ||||| ||||||||||| || ||| || |||||||||||||| | Sbjct 10684805 TTCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCCG 10684864 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | || || | || || || ||||| || ||||| |||| | || ||||||| | Sbjct 10684865 CTAGGGTTCGGCCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCTGGTG 10684924 Query 44229 GCACACCTTCCTT-TTCCGTT 44248 | | |||||| || ||| ||| Sbjct 10684925 GTATACCTTCTTTGTTCTGTT 10684945 >seq5 Length=16150104 Score = 149 bits (164), Expect = 5e-31 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| || ||||| |||||| || |||||||| |||||||| || |||| || Sbjct 6389264 CACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTC 6389205 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 6389204 CAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTG 6389145 Query 44248 TATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| |||| || ||| | |||||||||| |||||| ||||| | || || || Sbjct 6389144 GATCTTC-GCTTTGACATTGT--CGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGT 6389088 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||| ||||| ||||||||||| |||||| Sbjct 6389087 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 6389054 >seq762 Length=4953 Score = 140 bits (154), Expect = 2e-28 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || ||||| || |||||| ||||||||||||||||| |||| || |||| | Sbjct 161 ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCT 218 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| ||||| ||||| | | ||||||||| | ||| | ||||||||| ||| Sbjct 219 CCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCT 278 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| |||| || ||| | |||||||| | | ||||||||| | || || ||| Sbjct 279 GGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 337 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| |||||||| ||||| Sbjct 338 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 Score = 98.7 bits (108), Expect = 7e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||| || |||||||||||||| || ||| ||| | || || Sbjct 4772 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCA 4831 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | |||||||| || Sbjct 4832 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 4891 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| | |||||||||| || || ||||| Sbjct 4892 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTG 4951 Query 44309 CC 44310 || Sbjct 4952 CC 4953 >seq6 Length=18523719 Score = 140 bits (154), Expect = 2e-28 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || ||||| || |||||| ||||||||||||||||| |||| || |||| | Sbjct 1438297 ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCT 1438354 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| ||||| ||||| | | ||||||||| | ||| | ||||||||| ||| Sbjct 1438355 CCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCT 1438414 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| |||| || ||| | |||||||| | | ||||||||| | || || ||| Sbjct 1438415 GGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 1438473 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| |||||||| ||||| Sbjct 1438474 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | |||| ||| || ||| ||||| |||||||||||||| Sbjct 1443177 CATACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATC 1443236 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| | || |||| |||| |||||| ||||| ||||| | | |||||||| | Sbjct 1443237 GGCCAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGG 1443296 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 ||| | ||| ||||| ||| ||||| |||| || ||| | |||||||| | | || Sbjct 1443297 AGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTT 1443355 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || ||||| ||||| |||||||| ||||| Sbjct 1443356 CAACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || ||||| ||||||||||||||||||||| ||||| ||| |||| || Sbjct 17514199 CACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTC 17514140 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| ||||| |||||||| | | |||||| |||| || | |||||||| ||| Sbjct 17514139 AAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 17514080 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || ||||| | || ||||||| || || || || Sbjct 17514079 AATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTTT 17514020 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| || || || ||||| Sbjct 17514019 GCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | ||||| || || ||| ||| || ||||||||||| || Sbjct 17513992 CATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 17513933 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| ||| | || || |||||||| ||||| ||||| | | |||||| || | Sbjct 17513932 AGCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGG 17513873 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGA 44283 ||| | || || || || ||||| ||||| || ||| | |||||||| | | Sbjct 17513872 AGGAATTCCCTCTTTATCTTGGATCTT-TGCTTTGACATTGT--CGATGGTGTCAGAGCT 17513816 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || || | || ||||| ||||||||||| Sbjct 17513815 CTCGACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 98.7 bits (108), Expect = 7e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||| || |||||||||||||| || ||| ||| | || || Sbjct 1442907 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCA 1442966 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | |||||||| || Sbjct 1442967 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 1443026 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| | |||||||||| || || ||||| Sbjct 1443027 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTG 1443086 Query 44309 CC 44310 || Sbjct 1443087 CC 1443088 >seq642 Length=6837 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | |||| ||| || ||| ||||| |||||||||||||| Sbjct 138 CATACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATC 197 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| | || |||| |||| |||||| ||||| ||||| | | |||||||| | Sbjct 198 GGCCAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGG 257 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 ||| | ||| ||||| ||| ||||| |||| || ||| | |||||||| | | || Sbjct 258 AGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTT 316 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || ||||| ||||| |||||||| ||||| Sbjct 317 CAACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq3 Length=15215380 Score = 98.7 bits (108), Expect = 7e-16 Identities = 167/235 (71%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| || ||||| || |||||||||||||||||||| Sbjct 11192529 CATCCCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATC 11192588 Query 44167 GGC--GAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || |||| |||| | || || ||||| || ||||||||||| | | |||||| || Sbjct 11192589 CGCAAGAGTATGGC---CATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTC 11192645 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 | | | | |||||||| || ||||| ||| ||||| | |||||||| | Sbjct 11192646 CGGAAGGATTCCTTCCTTGTCTTGGATCTTGGTCTT-GATGTTGTCAATGGTGTCTGAAC 11192704 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | || || ||||| || || || ||||| || |||| |||||| Sbjct 11192705 TTTCGACCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGA-TTGCAT 11192758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984007582969