Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1 172 4e-38
seq4 150 1e-31
seq5 149 5e-31
seq762 140 2e-28
seq6 140 2e-28
seq642 127 1e-24
seq3 98.7 7e-16
>seq1
Length=19836964
Score = 172 bits (190), Expect = 4e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| |||||||| | | |||| ||||||||| |||||| |||||||||||||| ||
Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
|||| | | |||| ||||||||||||||||| || |||| |||||||||||| | ||
Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289
| |||||||| || |||||| ||||| | | || ||||||| || || ||
Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| | || |||||||| ||||| ||||| ||||| |||||||||||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995
>seq4
Length=14320061
Score = 150 bits (166), Expect = 1e-31
Identities = 161/211 (76%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||| ||||||||||| |||||||| ||| |||| ||
Sbjct 6306127 ACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCG 6306186
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| |||||||| || | ||| | |||||||| |||
Sbjct 6306187 AGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 6306246
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||||| ||| || ||||| | ||||| ||||
Sbjct 6306247 ATCTTGGCCTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCT 6306304
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || ||||| ||||||||||| |||||
Sbjct 6306305 TCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335
Score = 84.2 bits (92), Expect = 2e-11
Identities = 104/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168
|||| ||||| || ||||| ||||||||||| || ||| || |||||||||||||| |
Sbjct 10684805 TTCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCCG 10684864
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
| || || | || || || ||||| || ||||| |||| | || ||||||| |
Sbjct 10684865 CTAGGGTTCGGCCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCTGGTG 10684924
Query 44229 GCACACCTTCCTT-TTCCGTT 44248
| | |||||| || ||| |||
Sbjct 10684925 GTATACCTTCTTTGTTCTGTT 10684945
>seq5
Length=16150104
Score = 149 bits (164), Expect = 5e-31
Identities = 163/214 (76%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||| || ||||| |||||| || |||||||| |||||||| || |||| ||
Sbjct 6389264 CACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTC 6389205
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||| |||||||| || || || |||||||| || | || | || ||||| |||
Sbjct 6389204 CAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTG 6389145
Query 44248 TATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
|||||| |||| || ||| | |||||||||| |||||| ||||| | || || ||
Sbjct 6389144 GATCTTC-GCTTTGACATTGT--CGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGT 6389088
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||| ||||| ||||| ||||||||||| ||||||
Sbjct 6389087 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 6389054
>seq762
Length=4953
Score = 140 bits (154), Expect = 2e-28
Identities = 161/212 (76%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186
|| || ||||| || |||||| ||||||||||||||||| |||| || |||| |
Sbjct 161 ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCT 218
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
||| |||||| ||||| ||||| | | ||||||||| | ||| | ||||||||| |||
Sbjct 219 CCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCT 278
Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| |||| || ||| | |||||||| | | ||||||||| | || || |||
Sbjct 279 GGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 337
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||||| |||||||| |||||
Sbjct 338 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
Score = 98.7 bits (108), Expect = 7e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || ||| || |||||||||||||| || ||| ||| | || ||
Sbjct 4772 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCA 4831
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||||||| || | || | |||||||| ||
Sbjct 4832 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 4891
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | |||||||||| | |||||||||| || || |||||
Sbjct 4892 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTG 4951
Query 44309 CC 44310
||
Sbjct 4952 CC 4953
>seq6
Length=18523719
Score = 140 bits (154), Expect = 2e-28
Identities = 161/212 (76%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186
|| || ||||| || |||||| ||||||||||||||||| |||| || |||| |
Sbjct 1438297 ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCT 1438354
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
||| |||||| ||||| ||||| | | ||||||||| | ||| | ||||||||| |||
Sbjct 1438355 CCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCT 1438414
Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| |||| || ||| | |||||||| | | ||||||||| | || || |||
Sbjct 1438415 GGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTC 1438473
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||||| |||||||| |||||
Sbjct 1438474 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
Score = 127 bits (140), Expect = 1e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||||| | |||| ||| || ||| ||||| ||||||||||||||
Sbjct 1443177 CATACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATC 1443236
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
||| | || |||| |||| |||||| ||||| ||||| | | |||||||| |
Sbjct 1443237 GGCCAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGG 1443296
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285
||| | ||| ||||| ||| ||||| |||| || ||| | |||||||| | | ||
Sbjct 1443297 AGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTT 1443355
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||| | || || ||||| || ||||| ||||| |||||||| |||||
Sbjct 1443356 CAACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| || || ||||| ||||||||||||||||||||| ||||| ||| |||| ||
Sbjct 17514199 CACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTC 17514140
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||| ||||| |||||||| | | |||||| |||| || | |||||||| |||
Sbjct 17514139 AAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 17514080
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | || ||||| | || ||||||| || || || ||
Sbjct 17514079 AATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTTT 17514020
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||||||||| || || || |||||
Sbjct 17514019 GCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 104 bits (114), Expect = 2e-17
Identities = 165/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | ||||| || || ||| ||| || ||||||||||| ||
Sbjct 17513992 CATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 17513933
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|||||| ||| | || || |||||||| ||||| ||||| | | |||||| || |
Sbjct 17513932 AGCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGG 17513873
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGA 44283
||| | || || || || ||||| ||||| || ||| | |||||||| | |
Sbjct 17513872 AGGAATTCCCTCTTTATCTTGGATCTT-TGCTTTGACATTGT--CGATGGTGTCAGAGCT 17513816
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| | || || ||||| || || | || ||||| |||||||||||
Sbjct 17513815 CTCGACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 98.7 bits (108), Expect = 7e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || ||| || |||||||||||||| || ||| ||| | || ||
Sbjct 1442907 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCA 1442966
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||||||| || | || | |||||||| ||
Sbjct 1442967 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 1443026
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | |||||||||| | |||||||||| || || |||||
Sbjct 1443027 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTG 1443086
Query 44309 CC 44310
||
Sbjct 1443087 CC 1443088
>seq642
Length=6837
Score = 127 bits (140), Expect = 1e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||||| | |||| ||| || ||| ||||| ||||||||||||||
Sbjct 138 CATACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATC 197
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
||| | || |||| |||| |||||| ||||| ||||| | | |||||||| |
Sbjct 198 GGCCAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGG 257
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285
||| | ||| ||||| ||| ||||| |||| || ||| | |||||||| | | ||
Sbjct 258 AGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTT 316
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||| | || || ||||| || ||||| ||||| |||||||| |||||
Sbjct 317 CAACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq3
Length=15215380
Score = 98.7 bits (108), Expect = 7e-16
Identities = 167/235 (71%), Gaps = 9/235 (4%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | |||||| || ||||| || ||||||||||||||||||||
Sbjct 11192529 CATCCCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATC 11192588
Query 44167 GGC--GAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| |||| |||| | || || ||||| || ||||||||||| | | |||||| ||
Sbjct 11192589 CGCAAGAGTATGGC---CATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTC 11192645
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282
| | | | |||||||| || ||||| ||| ||||| | |||||||| |
Sbjct 11192646 CGGAAGGATTCCTTCCTTGTCTTGGATCTTGGTCTT-GATGTTGTCAATGGTGTCTGAAC 11192704
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||| | || || ||||| || || || ||||| || |||| ||||||
Sbjct 11192705 TTTCGACCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGA-TTGCAT 11192758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359984007582969
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