Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 5e-32
seq4 123 2e-23
seq6 111 1e-19
>seq5
Length=16150104
Score = 152 bits (168), Expect = 5e-32
Identities = 175/233 (75%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || ||||| | ||||||||||||||| ||||||||||||||| |||||||
Sbjct 6389283 CGCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 6389224
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
||| || || |||| || ||||| || |||||||| || | ||||| ||||||| |
Sbjct 6389223 CGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTG 6389164
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
||| | |||||||||| || | || |||| || | | | |||||| || ||
Sbjct 6389163 GAATTCCCTCCTTGTCC-TGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCG 6389105
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | ||||| || || ||||| || || || ||||| |||||||||||
Sbjct 6389104 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052
>seq4
Length=14320061
Score = 123 bits (136), Expect = 2e-23
Identities = 169/234 (72%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || ||||| | || || || || || |||||||| ||||| |||||||
Sbjct 6306107 CGCCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGG 6306166
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
||||||||| |||| ||||||||||| |||||||| |||| ||||| ||||||| |
Sbjct 6306167 CGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAG 6306226
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811
| | | ||||||||| ||| || ||| || | || | |||||| |||||
Sbjct 6306227 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCGGAGGACTC 6306284
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | || || || || || || || || || ||||| |||||||| ||
Sbjct 6306285 GACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCTT 6306338
>seq6
Length=18523719
Score = 111 bits (122), Expect = 1e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| ||| ||||| ||||| |||||| || ||||| || || | |
Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754
|||||||| |||| || ||||| || || || || || || | ||| ||||| | |||
Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | || ||||||||| ||| | || || | ||| | | ||||| ||| |
Sbjct 17514096 ATCCCT-TCCTTGTCC-TGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAA 17514039
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || ||||| ||||| || ||||| || |||||||||||
Sbjct 17514038 CCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 89.7 bits (98), Expect = 5e-13
Identities = 163/232 (70%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| ||||| || || || || |||||||| || || || || |
Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754
|| ||||| | || || ||||| || || ||||| || || | ||||||||| | |||
Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||||||| ||| | ||||| | ||| | | ||||| |||| |
Sbjct 17514324 ATCCCT-TCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---T 17514270
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| ||||| | || || ||||| || || || || || || |||||||||||
Sbjct 17514269 CAACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462295580288400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |