Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 179 4e-40 seq13 172 7e-38 seq9 93.3 5e-14 >seq15 Length=10047770 Score = 179 bits (198), Expect = 4e-40 Identities = 375/556 (67%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || ||||||||||| | |||||| || | |||||||||||||| || || Sbjct 1769302 CAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGT 1769361 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | || ||||| | |||||||| || ||||||||||| | | || | | | || || | Sbjct 1769362 TAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTG-CACAGAAGCTTCCCGAGA 1769420 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT 24309 | || || ||||| || ||||| | || | || ||| || || | | ||| Sbjct 1769421 AAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCAT 1769480 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | |||||| | |||||||| | ||||| || | ||||| || || Sbjct 1769481 CGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGC 1769540 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||| || ||| || || ||| || | ||| | |||| |||||||||||||| Sbjct 1769541 GAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACA 1769600 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || ||||| ||||| |||||||| || ||||| || ||||| | |||||||| | Sbjct 1769601 TCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGA 1769660 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 ||| ||||| | || ||| | || | || || || || || ||| ||| | Sbjct 1769661 CCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGG 1769720 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 | || || || | || ||||| || |||| || ||||| | || || || | ||| | Sbjct 1769721 CGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGT 1769780 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 || |||| || | ||||||||| ||| | ||||| || || || || || || | Sbjct 1769781 GGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCT 1769840 Query 24670 TATACATATTCCAGAT 24685 | ||||| | |||||| Sbjct 1769841 TGTACATTTCCCAGAT 1769856 >seq13 Length=5050363 Score = 172 bits (190), Expect = 7e-38 Identities = 388/578 (67%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| || || | ||| || |||| ||||||||| ||||| || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAA 24253 || ||||| | || |||||||| | ||||||||||| |||| | | ||| || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAGCTCCCCGAGAAAAA 3176101 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || || || || |||||||| | | | || || | | | ||| || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAAT 3176041 Query 24314 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||| | || ||||| | ||||||||||| || ||||| | ||||| || || | Sbjct 3176040 CCAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGA 3175982 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 |||| | |||||| || ||||| | || | |||| || |||||| ||||| | Sbjct 3175981 AGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCT 3175922 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | ||||||||||| |||||||| ||||| || |||||||| | ||||||| |||| Sbjct 3175921 CGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCT 3175862 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | || ||| | || ||| | || | |||||| || || || || ||| |||| Sbjct 3175861 GGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAA 3175802 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 | || || | || ||||| | |||| || ||||| | || || | ||||| Sbjct 3175801 AGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGC 3175742 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 || || | ||||| ||| ||||| || | ||||| || || || ||||| ||||| | Sbjct 3175741 GGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGT 3175682 Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 |||| | ||||| | | || ||||| || || ||| Sbjct 3175681 ACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATA 3175644 >seq9 Length=12411895 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 53924 TCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||||| || || ||||||||| || | |||||| || || |||||| || | || | Sbjct 8674109 TCTCTCTCATACTTAGTGTATA-AAGC-TTCAAATTCTTCACCCCAACAATCAGCTAACC 8674052 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 ||||| |||| |||||| | ||| ||||| | ||| | | | |||| || ||||| Sbjct 8674051 CAGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAA 8673992 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 | |||||||| | ||||||||| |||||||||||| | || || ||||| Sbjct 8673991 ATAGATCAGGTACCCAAAGAGCATAAAATAGATCTCTTGCTCGGTGCTCCTC 8673940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593601104201280