Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq14 107 2e-18 seq11 104 3e-17 seq5 95.1 1e-14 seq1 89.7 6e-13 seq15 86.0 7e-12 >seq6 Length=25289714 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 179461 CTCCTTCTGAATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 179402 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||||||| ||| || |||| ||| Sbjct 179401 GATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 179343 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||||| || || | || ||||| || |||||||| || || | Sbjct 179342 TGTCAATGGTATCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTGA 179283 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 179282 CGAAGATCTGCATCTT 179267 >seq14 Length=4882680 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||| | ||| |||||| || || ||||| ||||| || || ||| | Sbjct 1410976 ACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTTCGCCC 1411035 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || ||||||||||| || || | ||||||||| | || | || |||||| Sbjct 1411036 ATCCTCGAGTTGTTTACCAGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTT 1411095 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 |||| ||| || |||| | | | ||||| |||| || || || | || Sbjct 1411096 GTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCGACTTCCAGGGT 1411152 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| ||||| || || ||||| || || || ||||| Sbjct 1411153 GATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1411191 >seq11 Length=15446199 Score = 104 bits (114), Expect = 3e-17 Identities = 159/220 (72%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||||||| | || ||||||||||||||||| || || ||||| | | Sbjct 13442068 CGCAGCACCAAATGAAGAGTCGATTCCTTTTGAATATTGTAGTCGGCTAGAGTTCTACCA 13442009 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || || ||||| || | | ||||| |||| ||| | | |||||| Sbjct 13442008 TCCTCCAGTTGTTTTCCGGCGAAGATCAACCTTTGCTGATCGGGCGGTATCCCTTCCTTG 13441949 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| ||| |||| | |||| ||| | | | ||||| |||| ||||| |||| | Sbjct 13441948 TCC-TGAATTTTAGCCTTGA-CGTTGTCTATGGTGTCTGAGCTC---TCCACCTCGAGGG 13441894 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| || || || ||||||||||| ||||| Sbjct 13441893 TGATTGTTTTGCCGGTCAGAGTTTTTACAAAGATCTGCAT 13441854 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || |||||||| ||||| | | | || || |||||||||||||| || Sbjct 13442501 CTCCTTCTGAATGTTATAATCAGCGAGAGTTCTCCCATCCTCAAGCTGCTTACCAGCAAA 13442442 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| ||||||||| | || | || ||||| ||| ||| ||| |||| | Sbjct 13442441 GATCAGTCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACATT 13442382 Query 43112 CGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||||| || | ||||||||||| || || | ||||| Sbjct 13442381 ATCAATGGTGTC---CGAACTCTCCACTTCCAGGGTGATGGTTTTTCCTGTCAATGTCTT 13442325 Query 43169 TACAAAGATTTGCAT 43183 || || || ||||| Sbjct 13442324 CACGAAAATCTGCAT 13442310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||||| ||||||||||| || || || || || |||||||| || Sbjct 13254079 CCTCCCCTCAAACGCAGCACCAAATGCAGGGTCGATTCTTTCTGGATGTTGTAATCTGCA 13254138 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || || ||||| || || || || | || ||||||||| | || Sbjct 13254139 AGGGTCCTGCCATCCTCAAGTTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCTGGAGGA 13254198 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| |||| | |||| | | | ||| ||| |||||| Sbjct 13254199 ATCCCTTCCTTGTCC-TGAATTTTCGCCTTGACATTATCAATCGTATCGGAGCTTTCCAC 13254257 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || || || || || || ||||| |||||||| |||||| Sbjct 13254258 TTCCAGGGTTATAGTCTTCCCTGTGAGGGTCTTGACAAAGATCTGCATT 13254306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || |||||| |||||||| ||||| |||||||||| | || || Sbjct 13442290 ACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCGGCCAGAGTCCTTCCATCTTCC 13442231 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| |||||||| || || | ||| || || | || | | || |||||| || Sbjct 13442230 AACTGCTTGCCAGCGAAAATCAGCCTCTGTTGATCTGGTGGAATTCCTTCTTTGTCC-TG 13442172 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | |||||| ||| | | | | || || |||| || || || | || || || Sbjct 13442171 AATTTTTGCTTTTACATTGTCAATTGTATCAGAGCTC---TCAACTTCCAGGGTAATAGT 13442115 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || || |||||||| || ||||| Sbjct 13442114 CTTGCCCGTCAGGGTTTTTACAAAAATCTGCAT 13442082 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | |||||||| || | || ||||||||||||||| || ||||| Sbjct 13253623 CCTCCTCTCAGTCTCAACACCAGGTGGAGAGTCGACTCCTTTTGAATATTATAGTCAGCA 13253682 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| |||| || |||||||||||||| || || | ||||||||||| | || Sbjct 13253683 AGGGTCCTGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGAGGA 13253742 Query 43077 ACGCTCTCCTTGTC 43090 | || |||||||| Sbjct 13253743 ATGCCTTCCTTGTC 13253756 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| || || || | | || || | ||| || |||||||| Sbjct 13445116 TCCTTCTGAATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAACTGTTTCCCAGCGAAA 13445057 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || |||||||| || | || | | ||||||||| ||| || || | | Sbjct 13445056 ATCAGACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTG 13444997 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | ||| || |||| || || |||||||| ||||| || || ||| Sbjct 13444996 TCGATGGTGTCTGAGGTTTCGACTTCGAGAGTAATTGTTTTGCCAGTTAGGGTTTTCACA 13444937 Query 43173 AAGATTTGCAT-TTTTACGCCGAATACAA 43200 ||||||||||| || | || | || |||| Sbjct 13444936 AAGATTTGCATCTTCTTCGGCTAAGACAA 13444908 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | |||||||| |||| ||| ||||||||||||||| || ||||| Sbjct 13253851 CCTCCTCTCAGTCTCAACACCAGGTGCAGTGTCGACTCCTTTTGAATATTATAGTCAGCG 13253910 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || |||||||||||||| || || | ||||| || || | || Sbjct 13253911 AGGGTCCTGCCATCCTCGAGCTGCTTACCAGCAAAAATCAAACGCTGTTGATCAGGGGGA 13253970 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||| || |||||| || | | | | ||||| |||| || Sbjct 13253971 ATCCCTTCCTTATCTTGGATTTTGGCCTTAACATTGTCAATAGTGTCCGAGCTC---TCA 13254027 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || ||||| | ||||| ||||| || ||||| Sbjct 13254028 ACCTCCAATGTTATGGTCTTCCCCGTCAAGGTCTTAACAAAAATCTGCAT 13254077 >seq5 Length=18898134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || || |||| ||| | ||| | || ||||| |||||||||||||| ||| Sbjct 2599105 CCACCCCTCAATCGCAGCACAAGATGGAGGGTCGATTCCTTCTGAATATTGTAATCTGCC 2599164 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | |||| | || || || || || ||||| || || | || ||||||||| | || Sbjct 2599165 AAGGTCCTTCCATCCTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 2599224 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||||| ||| |||||| ||||| | | | ||||| ||| ||| Sbjct 2599225 ATCCCCTCCTTGTCC-TGAATTTTTGCTTTGACATTGTCAATTGTGTCTGAGCT---TTC 2599280 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 2599281 AACTTCCAGGGTAATAGTTTTACCAGTAAGAGTCTTCACAAATATTTGCAT 2599331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||| || ||||| ||| | || || || ||||| ||||| ||| Sbjct 2599369 TCCTTCTGGATATTGTAATCTGCAAGAGTTCGCCCATCCTCAAGTTGCTTCCCAGCAAAT 2599428 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || ||||| || | ||| | | ||| |||||| ||| ||| ||||| | Sbjct 2599429 ATTAGCCGTTGCTGATCAGGCGGAATCCCCTCTTTGTCCTGGATCTTTGCTTTGACATTG 2599488 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || || |||| || || || | ||||||||||| || || || || || Sbjct 2599489 TCAATGGTATCTGAGCTC---TCAACCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTC 2599545 Query 43170 ACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 2599546 ACAAAAATCTGCAT 2599559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || ||||| || | ||| | || ||| ||||||||||| |||||||| Sbjct 2598877 CCACCTCTCAATCGCAAAACTAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGCA 2598936 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | || || |||||||||||||| || || | |||||| ||||| | || Sbjct 2598937 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGTTGGTCTGGAGGA 2598996 Query 43077 ACGCTCTCCTTGTCC 43091 | || ||||| ||| Sbjct 2598997 ATGCCTTCCTTATCC 2599011 >seq1 Length=18577331 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||||||| || || ||| ||||||||| |||| |||||||||||||||| ||||| Sbjct 7464911 AAAATTTTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 7464970 Query 60118 CACCACTATACTAC 60131 |||||||||||||| Sbjct 7464971 CACCACTATACTAC 7464984 >seq15 Length=10047770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 5378324 AAAAAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 5378265 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 5378264 TCACCACTATACTAC 5378250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571701549618080