Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq11 107 3e-18 seq5 98.7 1e-15 seq1 95.1 2e-14 >seq11 Length=15446199 Score = 107 bits (118), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||||| ||| |||| || ||| || | ||| ||||||||||| |||||||| Sbjct 11225014 ATATTGTAATCTGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTC 11224955 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| |||||||| Sbjct 11224954 TGCTGATCAGGAGGAATTCCTTCCTTATCTTG 11224923 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | || | ||| | ||| || || || ||||| ||||| | Sbjct 13254305 TTCCACCACGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTCTGGATATTGTAATCAG 13254364 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || | | || || | || ||||||||||||||||||||||||||||| |||| Sbjct 13254365 CAAGCGTGCGTCCGTCTTCAAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGATCAGGAG 13254424 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 13254425 GAATTCCTTCTTTATCTTG 13254443 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||||| ||| |||| || ||| || | ||| ||||||||||| |||||||| Sbjct 11225242 ATATTGTAATCTGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTC 11225183 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| || || || Sbjct 11225182 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 11225151 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/183 (69%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | ||||||||||| ||| || | || || |||||||| ||||| | Sbjct 11225926 ATGTTATAATCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAGCGC 11225867 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| ||||||||||| ||||||||||| || ||| Sbjct 11225866 TGCTGGTCCGGAGGAATACCTTCTTTATCCTGAATCTTCGCCTTAACATTGTCAATTGTA 11225807 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||||| || || |||| ||||| || || || || || ||||| | ||||||||| Sbjct 11225806 TCCGAACTCTCAACCTCTAAAGTGATGGTCTTTCCAGTCAAAGTTTTGACAAATATTTGC 11225747 Query 146276 ATT 146278 ||| Sbjct 11225746 ATT 11225744 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| || | || | || | ||||| || || ||||| ||||| | Sbjct 11225517 TTCCACCACGAAGCCTGAGGACAAGGTGGAGTGTAGACTCCTTTTGGATATTGTAATCAG 11225458 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| |||| || ||| || | ||| || ||||||||||||||||| ||||| || |||| Sbjct 11225457 CAAGGGTTCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGAG 11225398 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || || || Sbjct 11225397 GAATCCCTTCCTTGTCCTG 11225379 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| ||||| || |||| || | ||| || || ||| || |||||||| || | Sbjct 13253623 CCTCCTCTCAGTCTCAACACCAGGTGGAGAGTCGACTCCTTTTGA-ATATTATAGTCAGC 13253681 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || |||| || || | || || |||||||| ||||| | ||||| |||||||| Sbjct 13253682 AAGGGTCCTGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGAGG 13253741 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 13253742 AATGCCTTCCTTGTCTTG 13253759 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||| | |||||||| | ||| ||||| ||| || ||||| || || | Sbjct 13442080 CCACCGCGGAGTCGCAGCACCAAATGAAGAGTCGATTCCTTTTGA-ATATTGTAGTCGGC 13442022 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | ||| || | ||||||||| || || ||||| ||||||||||| || || Sbjct 13442021 TAGAGTTCTACCATCCTCCAGTTGTTTTCCGGCGAAGATCAACCTTTGCTGATCGGGCGG 13441962 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 13441961 TATCCCTTCCTTGTCCTG 13441944 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || || | |||||||| ||||| || || || ||||||||||| | Sbjct 13442308 CCACCGCGCAGCCTCAGGACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCGGCC 13442249 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || || || || ||||| ||||||| || || ||||| || ||| Sbjct 13442248 AGAGTCCTTCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGTTGATCTGGTGGA 13442189 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 13442188 ATTCCTTCTTTGTCCTG 13442172 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/198 (67%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || |||||||| ||||| ||||||| || || || | ||| || | |||||| || Sbjct 11225713 GTTGATTCTTTCTGGATATTGTAATCTGCCAGCGTCCTTCCATCTTCAAGTTGTTTACCG 11225654 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNN 146200 ||||| |||||||| ||||| || ||||| ||||||||||| || || Sbjct 11225653 GCAAAGATCAATCTCTGCTGGTCAGGAGGGATTCCTTCTTTGTCCTGGATTTTTGCCTTA 11225594 Query 146201 NNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTT 146260 |||||||||||||| ||||| || || || || ||||| || | || Sbjct 11225593 ACATTGTCAATTGTATCTGAACTTTCAACTTCCAGAGTAATCGTCTTACCAGTAAGAGTC 11225534 Query 146261 TTAATGAATATTTGCATT 146278 || | || || |||||| Sbjct 11225533 TTTACAAAAATCTGCATT 11225516 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| ||||| || |||| || | || || || ||| || |||||||| || | Sbjct 13253851 CCTCCTCTCAGTCTCAACACCAGGTGCAGTGTCGACTCCTTTTGA-ATATTATAGTCAGC 13253909 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || |||| ||| || | || || |||||||||||||| | || ||||| || || Sbjct 13253910 GAGGGTCCTGCCATCCTCGAGCTGCTTACCAGCAAAAATCAAACGCTGTTGATCAGGGGG 13253969 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 13253970 AATCCCTTCCTTATCTTG 13253987 >seq5 Length=18898134 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || || || | ||| | |||||| ||||| ||||||||||| | | Sbjct 2598877 CCACCTCTCAATCGCAAAACTAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGCA 2598936 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || | || || |||||||| ||||||| || || || |||||| Sbjct 2598937 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGTTGGTCTGGAGGA 2598996 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 2598997 ATGCCTTCCTTATCCTG 2599013 >seq1 Length=18577331 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || || ||||| || || | || | || |||||||| ||||| |||||| Sbjct 937614 GTCCCTCCCCTGAGTCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGAATATTGTAATCT 937555 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||||| ||| || || ||||| ||||||||||| | || ||||| || ||| Sbjct 937554 GCAAGGGTTCTGCCATCTTCCAACTGTTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGA 937495 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 937494 GGTATACCTTCTTTGTCCTG 937475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743375501317120