Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 194 2e-44 seq13 172 7e-38 seq9 84.2 3e-11 >seq15 Length=10047770 Score = 194 bits (214), Expect = 2e-44 Identities = 412/615 (67%), Gaps = 0/615 (0%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || ||||||||||||| |||||| || | ||||||||||| || || || Sbjct 1769302 CAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGT 1769361 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | || ||||| | |||||||| || ||||||||||| | | ||| ||| || || Sbjct 1769362 TAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAA 1769421 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33757 || || ||||| || |||||| | || | || || || || | | ||| Sbjct 1769422 AAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATC 1769481 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | |||||| | |||||||| | ||||| || | || || || || Sbjct 1769482 GATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCG 1769541 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||| || ||| || || ||| || | ||| | || | ||||||||||||||| Sbjct 1769542 AAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACAT 1769601 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || ||||| ||||| |||||||| |||||||| || ||||| | |||||||| | Sbjct 1769602 CTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGAC 1769661 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| ||||| | || ||| | || | || || || || |||||| ||| || Sbjct 1769662 CTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGC 1769721 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 34057 || || || | || ||||| || |||| || ||||| | || || || | ||| | Sbjct 1769722 GAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTG 1769781 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 || |||| || | ||||||||| ||| | ||||| || || || || || || || Sbjct 1769782 GCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTT 1769841 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 ||||| | |||||| | | || ||||| ||||| || || | | || || || Sbjct 1769842 GTACATTTCCCAGATTTGTGGGTACTGGATGGGGAACATGCAGAAGCGGTCGGGGTTGGG 1769901 Query 34178 TGCAAGGATAGGTTC 34192 || |||| |||||| Sbjct 1769902 GGCGAGGAGAGGTTC 1769916 >seq13 Length=5050363 Score = 172 bits (190), Expect = 7e-38 Identities = 407/612 (67%), Gaps = 2/612 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| || |||| ||| || |||| ||||||||| || || || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || |||||||| | ||||||||||| ||| || || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAAT 3176100 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || || || || ||||||||| | | | ||| || | | | ||| ||| Sbjct 3176099 ATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAATC 3176040 Query 33762 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 || | || ||||| | ||||||||||| || ||||| | || || || || || Sbjct 3176039 CAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAA 3175981 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 ||| | |||||| || ||||| | |||| || | || |||||| ||||| || Sbjct 3175980 GAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTC 3175921 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 ||||||||||| |||||||| || || || |||||||| | ||||||| ||||| Sbjct 3175920 GGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTG 3175861 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 || ||| | || ||| | || | |||||| || || ||||| ||| ||||| Sbjct 3175860 GACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAA 3175801 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 || || | || ||||| | |||| || ||||| | || || | ||||| Sbjct 3175800 GAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGCG 3175741 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 || || | ||||| ||| ||||| || | ||||| || || || ||||| ||||| || Sbjct 3175740 GAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGTA 3175681 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180 ||| | ||||| | | || || || ||||| ||| || | | || || || || Sbjct 3175680 CATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATACAGAAGCGGTCGGGGTTGGGAGC 3175621 Query 34181 AAGGATAGGTTC 34192 |||| |||||| Sbjct 3175620 GAGGAGAGGTTC 3175609 >seq9 Length=12411895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 63162 TCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 ||||| || || ||| ||||| || | ||| || || || |||||| || | || | Sbjct 8674109 TCTCTCTCATACTTAGTGTATA-AAGC-TTCAAATTCTTCACCCCAACAATCAGCTAACC 8674052 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 |||| |||| |||||| | ||| ||||| | ||| | | | |||| || ||||| Sbjct 8674051 CAGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAA 8673992 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 | |||||||| | ||||||||| |||||||||||||| || || ||||| Sbjct 8673991 ATAGATCAGGTACCCAAAGAGCATAAAATAGATCTCTTGCTCGGTGCTCCTC 8673940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629689778518080