Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq3 89.7 5e-13 >seq13 Length=5050363 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 ||||||||||||||||| |||||||| |||| |||| |||||| || || || || Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAAGAA 11748 || ||||||| || || ||||| | ||||||||| || ||| || || || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAA 3176101 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTA 11777 ||| ||||| ||| ||||| || |||| Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTA 3176072 >seq3 Length=24928530 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| || ||||| | ||| || |||||| || ||||||||||| ||||| ||| Sbjct 1320255 CAAGCAAAGTCGCAATGCAGACCCTCATCTCTAGAAATAAGTTCATTAGAGAATGTCAAT 1320196 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCA 11728 || ||||||||||||| ||| || | |||||| || ||| Sbjct 1320195 CCCGGCATCAATCCTCTTTTCTTAAGCCAAAAAATGGCA 1320157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468429712891840