Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15 176 6e-39 seq13 176 6e-39 >seq15 Length=10047770 Score = 176 bits (194), Expect = 6e-39 Identities = 374/556 (67%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || ||||||||||| | |||||| || | |||||||||||||| || || Sbjct 1769302 CAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGT 1769361 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | || ||||| | |||||||| || ||||||||||| | | || | | | || || | Sbjct 1769362 TAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTG-CACAGAAGCTTCCCGAGA 1769420 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332 | || || ||||| || ||||| | || | || || || || || | ||| Sbjct 1769421 AAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCAT 1769480 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| | |||||| | |||||||| | ||||| || | ||||| || || Sbjct 1769481 CGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGC 1769540 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||| || ||| || || ||| || | ||| | |||| |||||||||||||| Sbjct 1769541 GAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACA 1769600 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 | || ||||| ||||| |||||||| || ||||| || ||||| | |||||||| | Sbjct 1769601 TCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGA 1769660 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 ||| ||||| | || ||| | || | || || || || || ||| ||| | Sbjct 1769661 CCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGG 1769720 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT 36632 | || || || | || ||||| || |||| || |||| | || || || | ||| | Sbjct 1769721 CGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGT 1769780 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 || |||| || | ||||||||| ||| | ||||| || || || || || || | Sbjct 1769781 GGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCT 1769840 Query 36693 TATACATATTCCAGAT 36708 | ||||| | |||||| Sbjct 1769841 TGTACATTTCCCAGAT 1769856 >seq13 Length=5050363 Score = 176 bits (194), Expect = 6e-39 Identities = 389/578 (67%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||| || || | ||| || |||| ||||||||| ||||| || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAA 36276 || ||||| | || |||||||| | ||||||||||| |||| | | ||| || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAGCTCCCCGAGAAAAA 3176101 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || || || || |||||||| | | | ||| || | || | ||| || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAAT 3176041 Query 36337 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 ||| | || ||||| | ||||||||||| || ||||| | ||||| || || | Sbjct 3176040 CCAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGA 3175982 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 |||| | |||||| || ||||| | || | |||| || |||||| ||||| | Sbjct 3175981 AGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCT 3175922 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 | ||||||||||| |||||||| ||||| || |||||||| | ||||||| |||| Sbjct 3175921 CGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCT 3175862 Query 36516 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 | || ||| | || ||| | || | |||||| || || || || ||| |||| Sbjct 3175861 GGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAA 3175802 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCAT 36635 | || || | || ||||| | |||| || |||| | || || | ||||| Sbjct 3175801 AGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGC 3175742 Query 36636 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 36695 || || | ||||| ||| ||||| || | ||||| || || || ||||| ||||| | Sbjct 3175741 GGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGT 3175682 Query 36696 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 |||| | ||||| | | || ||||| || || ||| Sbjct 3175681 ACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATA 3175644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658039223830240