Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 181 2e-40 seq13 181 2e-40 seq9 95.1 2e-14 >seq15 Length=10047770 Score = 181 bits (200), Expect = 2e-40 Identities = 571/875 (65%), Gaps = 16/875 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || || ||||| | ||| || || |||||||| || |||| ||| ||| Sbjct 1769014 TTTCTGATACTCCCCCACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAACTTATTAA 1769073 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| |||||||||| || |||| ||| | || | | |||||| || | Sbjct 1769074 CTCCATCCAATCAAACGGGTTTTGGACATAATACAACTTCCCATACCCCAATGCATTCAG 1769133 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 49846 ||||||||| || ||||| | || || |||||| ||| | |||||| || | | Sbjct 1769134 CAATCTATCAGCCACAAACTTAATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 1769193 Query 49847 -GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 49903 | || || || || |||| | ||| || ||||||| ||||| || | | Sbjct 1769194 CGCGCAA--GGCAGCGCATCGCAC--ACAAACTCCCTTTCAATGTCCACCGCGTCCGCCA 1769249 Query 49904 TAATAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAATGTTTAAACATCAAAC 49960 || | | || | || || ||| | || ||| ||| || | | ||| | Sbjct 1769250 CTATCGCCTTCACTTTCTCCTCGCTCAACTTCATTTTCAACAAAC---TATAAAGCAAGC 1769306 Query 49961 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 50020 | || ||||||||||||| |||||| || | |||| ||||||||| || || | | Sbjct 1769307 ACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAAC 1769366 Query 50021 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAG 50079 | ||||| | |||||||| || ||||||||||| | | || | | || || || || Sbjct 1769367 CCGGCATCAAACCACGCTTCTTCAGCCAAAATATTG-CACAGAAGCTTCCCGAGAAAAAT 1769425 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || ||||| || ||||| | | | || || || || | | | ||| ||| Sbjct 1769426 ATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATCGATC 1769485 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || | |||||| | |||||||| | ||||| || | || || || || ||| Sbjct 1769486 CAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAA 1769545 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 || ||| || || ||| || | ||| | || | ||||||||||||||| || Sbjct 1769546 AGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACATCTCG 1769605 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||| ||||| |||||||| |||||||| || ||||| | |||||||| | ||| Sbjct 1769606 GAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCTGA 1769665 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 ||||| | || ||| |||| | || || || || || ||| ||| || || Sbjct 1769666 ACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGAAG 1769725 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || | || ||||| || ||||| || |||| | || || || | ||| | | Sbjct 1769726 AAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGCGG 1769785 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 | |||| || | ||| ||||| ||| | ||||| || || || || || || || ||| Sbjct 1769786 AGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGTAC 1769845 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || | |||||| | | || ||||| ||||| || Sbjct 1769846 ATTTCCCAGATTTGTGGGTACTGGATGGGGAACAT 1769880 >seq13 Length=5050363 Score = 181 bits (200), Expect = 2e-40 Identities = 390/578 (67%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| || |||| ||| || |||| ||||| ||| ||||| || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGAA 50078 || ||||| | || |||||||| | ||||||||||| |||| | | ||| || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAGCTCCCCGAGAAAAA 3176101 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || || || || |||||||| || | | ||| || | | | ||| || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAAT 3176041 Query 50139 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 ||| | || ||||| | ||||||||||| || ||||| | || || || || | Sbjct 3176040 CCAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGA 3175982 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||| | |||||| || ||||| | |||| || | || |||||| ||||| | Sbjct 3175981 AGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCT 3175922 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | ||||||||||| |||||||| || || || |||||||| | ||||||| |||| Sbjct 3175921 CGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCT 3175862 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 | || ||| | || ||| |||| | |||||| || || || || ||| |||| Sbjct 3175861 GGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAA 3175802 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 | || || | || ||||| | ||||| || |||| || || || | ||||| Sbjct 3175801 AGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGC 3175742 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 || || | ||||| ||| ||||| || | ||||| || || || ||||| ||||| | Sbjct 3175741 GGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGT 3175682 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 |||| | ||||| | | || || || ||||| ||| Sbjct 3175681 ACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATA 3175644 >seq9 Length=12411895 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 ||||| || || | || ||||| ||| || || || |||||| ||| |||| ||| Sbjct 8674109 TCTCTCTCATACTTAGTGTATAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAACCCA 8674050 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 ||| || | ||||| | ||| ||||| | ||||| | | |||| || |||||| Sbjct 8674049 GGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAAAT 8673990 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||| | ||||||||| |||||||||||| | || |||||||| Sbjct 8673989 AGATCAGGTACCCAAAGAGCATAAAATAGATCTCTTGCTCGGTGCTCCTC 8673940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718123027347040