Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-15 seq3 98.7 1e-15 seq15 89.7 5e-13 >seq13 Length=5050363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||||||||||||||| | || ||||||| ||| | ||| || || || || || Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||||| || || ||||| ||||||||||| || ||| || ||| || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAA 3176101 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14036 ||| |||||||| |||||| || | ||| || || |||| ||| Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGAT 3176055 >seq3 Length=24928530 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| || ||||| || |||||||||||| ||||||||| || || ||||| ||| Sbjct 1320255 CAAGCAAAGTCGCAATGCAGACCCTCATCTCTAGAAATAAGTTCATTAGAGAATGTCAAT 1320196 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 || ||||||||||||| ||| || | |||||| || ||| Sbjct 1320195 CCCGGCATCAATCCTCTTTTCTTAAGCCAAAAAATGGCA 1320157 >seq15 Length=10047770 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 || ||| || ||||||||||| || || | |||||||| | || | |||||| | Sbjct 1769295 TATAAAGCAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGG 1769354 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 | || ||||| || |||||||| || || || || | ||||||||||||| || | Sbjct 1769355 AGAAAGTTAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTC 1769414 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 | || || ||||| || || || |||||| | ||||||||||| |||| Sbjct 1769415 CCGAGAAAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAA 1769466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479630639202400