Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq15 96.9 3e-15 seq13 91.5 1e-13 >seq3 Length=24928530 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| || ||||| || |||||||||||| ||||||||| || || ||||| ||| Sbjct 1320255 CAAGCAAAGTCGCAATGCAGACCCTCATCTCTAGAAATAAGTTCATTAGAGAATGTCAAT 1320196 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || ||||||||||||| ||| || | |||||| || ||| Sbjct 1320195 CCCGGCATCAATCCTCTTTTCTTAAGCCAAAAAATGGCA 1320157 >seq15 Length=10047770 Score = 96.9 bits (106), Expect = 3e-15 Identities = 369/573 (64%), Gaps = 15/573 (3%) Strand=Plus/Plus Query 13649 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13708 || ||| || ||||||||||| || || | |||||||| | || | |||||| | Sbjct 1769295 TATAAAGCAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGG 1769354 Query 13709 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 13768 | || ||||| || |||||||| || || || || | ||||||||||||| ||| || Sbjct 1769355 AGAAAGTTAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTC 1769414 Query 13769 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT 13828 | || || ||||| || || || |||||| | |||| |||||| |||| | | Sbjct 1769415 CCGAGAAAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAG-----T 1769469 Query 13829 TTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 || | || ||||| | |||||||| || || || | | | | | || Sbjct 1769470 TTCAGAGCCATCGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGT 1769529 Query 13887 TTCGATTGCATTGAATAA--ATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAA 13942 |||||||| ||| || ||||| |||||| | | ||| || || | |||| Sbjct 1769530 CTCGATTGC-GCGAAAAAGCATGTT-CTTCTCGGCCGAATCCTT--TATATAGGATTCAA 1769585 Query 13943 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAAC 14002 | | |||||||| || || || ||||| || || || |||||||| ||||| || Sbjct 1769586 GCAAAAGACTATACATCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGG 1769645 Query 14003 ATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAA 14062 | ||| || || || || ||| || | | | || | ||| || ||||| Sbjct 1769646 CACGAGCCTCGGAGACCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAA 1769705 Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 | |||||| || || || || || | | || ||| || || | | ||| ||| Sbjct 1769706 TGCCATCAGAGGCGGCGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAG 1769765 Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182 |||| |||| ||| | | | || | || | ||| ||||| || | ||||| || Sbjct 1769766 TGAGGTTTTCCCAGTGGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGG 1769825 Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTT 14215 || | ||||| || |||||| |||| |||| Sbjct 1769826 ACGCTTCGGCTTTCTTGTACATTTCCCAGATTT 1769858 >seq13 Length=5050363 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 ||||||||||||||||| | || ||||||| ||| | ||| || || || || || Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| || || ||||| ||||||||||| || ||| || || || ||| Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAAT 3176100 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 || |||||||| |||||| || | || || || |||| ||| Sbjct 3176099 ATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGAT 3176055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478491670403040