Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 seq8 87.8 1e-12 >seq11 Length=15446199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||||||| | | || || | || || | ||| || || ||||| Sbjct 11225252 CTCCTTTTGGATATTGTAATCTGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCAGCAAA 11225193 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| ||| ||||| | || | ||||| || || |||| | ||||||| | Sbjct 11225192 GATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCTTTGACATT 11225133 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| || || ||| ||| || || | || ||||| || || || || ||||||| Sbjct 11225132 GTCAATGGTATCTG-AGCTCTCCACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCA 11225074 Query 43097 CAAAAATTTGCATT 43110 ||||||| |||||| Sbjct 11225073 CAAAAATCTGCATT 11225060 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||| | |||| |||||| || | ||||||||| | Sbjct 13254307 CCACCACGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGCA 13254366 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| || | || || || ||||||||||||| || ||||| | || Sbjct 13254367 AGCGTGCGTCCGTCTTCAAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGATCAGGAGGA 13254426 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | ||| || ||| | |||||| Sbjct 13254427 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTATCAATAGTATCGGAACTCTCGACC 13254486 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || || ||||| || || || ||||| |||||||| Sbjct 13254487 TCGAGAGTTATGGTCTTGCCGGTCAGGGTCTTTACAAAGATTTGCAT 13254533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | || || | |||| ||| |||||| || | |||||||||| | Sbjct 13441624 CCACCTCGCAGACGTAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 13441565 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | || || ||||| || || | ||||| ||||| | ||| Sbjct 13441564 AAGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGATCTGGCGGA 13441505 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | | | |||||| | ||| || Sbjct 13441504 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACGTTATCTATCGTGTCGGAACTCTCAACC 13441445 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || |||||||| ||||| |||||||||||||| ||||| Sbjct 13441444 TCCAGCGTGATCGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 13441398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| | || | | || ||||| ||||| || || ||| Sbjct 13445116 TCCTTCTGAATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAACTGTTTCCCAGCGAAA 13445057 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||| ||||| | || | ||||| || || |||| | || || || Sbjct 13445056 ATCAGACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTG 13444997 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | ||||| || | || || ||||| || ||||| ||||||||| Sbjct 13444996 TCGATGGTGTCTGAGGTTTCGACTTCGAGAGTAATTGTTTTGCCAGTTAGGGTTTTCACA 13444937 Query 43099 AAAATTTGCATTTTCTT 43115 || |||||||| ||||| Sbjct 13444936 AAGATTTGCATCTTCTT 13444920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | |||||||||| ||| || | |||| || | || Sbjct 13441828 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCTGCCGTCTTCGAGCTGC 13441769 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || ||||| || || | ||||| ||||| | ||| | || || || || |||| Sbjct 13441768 TTCCCGGCGAAGATGAGGCGCTGCTGATCCGGCGGAATTCCCTCCTTGTCTTGGATCTTA 13441709 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| || | | ||||| ||| ||| || || | ||| || ||||||||||| Sbjct 13441708 GCCTTGACGTTGTCTATGGTGTCTG-AGCTCTCCACCTCCAGCGTGATCGTTTTTCCGGT 13441650 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||||| || || ||||| Sbjct 13441649 CAGAGTTTTCACGAAGATCTGCAT 13441626 >seq8 Length=21523998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||||| || || || | ||||| |||||||| || |||||||| |||| || Sbjct 16226405 TGGAGGGTGCTTTCTTTCTGTATGTTGTAGTCGGACAAAGTGCGTTCGTCTTCCAGCTGC 16226346 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA----T 43022 |||||||| || |||| ||| ||||| || | || || ||||||||||| ||| | Sbjct 16226345 TTGCCGGCGAATATCAGTCGTTGTTGGTCCGGAGGAACCCCTTCTTTTTC-TTGAATTTT 16226287 Query 43023 CAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCC 43082 || || || | | || ||||| | ||| || || | ||||| |||||||| Sbjct 16226286 GGAC---TTCACATTTTCTACAGTGTCCGTACTCTCCACATCCAGAGTTATGGTTTTTCC 16226230 Query 43083 GGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| | || || || || || ||||| Sbjct 16226229 GGTCAAGGTCTTAACGAAGATCTGCAT 16226203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381294136013688