Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 188 1e-42 seq13 181 1e-40 seq9 109 7e-19 >seq15 Length=10047770 Score = 188 bits (208), Expect = 1e-42 Identities = 570/873 (65%), Gaps = 12/873 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || || ||||| | ||| || || ||||||||||| |||| ||| ||| Sbjct 1769014 TTTCTGATACTCCCCCACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAACTTATTAA 1769073 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| |||||||||| || |||| ||| | || | | |||||| || | Sbjct 1769074 CTCCATCCAATCAAACGGGTTTTGGACATAATACAACTTCCCATACCCCAATGCATTCAG 1769133 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 41951 ||||||||| || | || | || || |||||| ||| | |||||| || | | Sbjct 1769134 CAATCTATCAGCCACAAACTTAATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 1769193 Query 41952 -GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 | || || || || | | ||| || |||||| |||||||| | | Sbjct 1769194 CGCGCAA--GGCAGCGCATCGCACACAAACTCCCTTTCAATGTCCACCGCGTCCGCCACT 1769251 Query 42011 ATAGATCTTACTGTTTCTTCACTCGG-TGGATA--CAATAAATGTTTAAACATCAAACAT 42067 || | | ||| | || || ||| | || ||| ||| || | | ||| || Sbjct 1769252 ATCGCCTTCACTTTCTCCTCGCTCAACTTCATTTTCAACAAAC---TATAAAGCAAGCAC 1769308 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || ||||||||||||| ||||||||| | |||||||||||||| || || | || Sbjct 1769309 GCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAACCC 1769368 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGAT 42186 ||||| | |||||||| || ||||||||||| | | || | | | || || || || || Sbjct 1769369 GGCATCAAACCACGCTTCTTCAGCCAAAATATTG-CACAGAAGCTTCCCGAGAAAAATAT 1769427 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 42246 ||||| || ||||| | || | || || || || || | ||| ||||| Sbjct 1769428 GCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATCGATCCA 1769487 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 | |||||| | |||||||| | ||||| || | || || || || ||| || Sbjct 1769488 GCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAAAG 1769547 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 ||| || || ||| || | ||| | || | ||||||||||||||| || || Sbjct 1769548 CATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACATCTCGGA 1769607 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 ||| ||||| |||||||| |||||||| || ||||| | ||||||| ||||| || Sbjct 1769608 ATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCTGAAC 1769667 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 ||| | || ||| |||| | || || || || || ||| ||| || || || Sbjct 1769668 TTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGAAGAA 1769727 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 || | || ||||| || |||| || ||||| | || | || | ||| | || Sbjct 1769728 GGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGCGGAG 1769787 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 |||| || | ||| ||||| || | ||||| || || ||||| || || || ||||| Sbjct 1769788 GTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGTACAT 1769847 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | |||||| | | || || || ||||| || Sbjct 1769848 TTCCCAGATTTGTGGGTACTGGATGGGGAACAT 1769880 >seq13 Length=5050363 Score = 181 bits (200), Expect = 1e-40 Identities = 390/578 (67%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||| || |||| ||| ||||||| ||||||||| ||||| || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAAGAA 42183 || ||||| | || |||||||| | ||||||||| | |||| | | ||| || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAGCTCCCCGAGAAAAA 3176101 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || || || || |||||||| | | | ||| || | || | ||| || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAAT 3176041 Query 42244 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 ||| | || ||||| | ||||||||||| || ||||| | || || || || | Sbjct 3176040 CCAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGA 3175982 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 |||| | |||||| || ||||| | || | || | || |||||| ||||| | Sbjct 3175981 AGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCT 3175922 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | ||||||||||| |||||||| || || || |||||||| | |||||||| | || Sbjct 3175921 CGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCT 3175862 Query 42423 GTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 | || ||| | || ||| |||| | |||||| || || || || ||| |||| Sbjct 3175861 GGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAA 3175802 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCAT 42542 | || || | || ||||| | |||| || ||||| | || | | ||||| Sbjct 3175801 AGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGC 3175742 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || || | ||||| ||| ||||| || | ||||| || || |||||||| ||||| | Sbjct 3175741 GGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGT 3175682 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 |||| | ||||| | | || ||||| ||||| ||| Sbjct 3175681 ACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATA 3175644 >seq9 Length=12411895 Score = 109 bits (120), Expect = 7e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 ||||| || || | || ||||| ||| || || || |||||| || |||| ||| Sbjct 8674109 TCTCTCTCATACTTAGTGTATAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAACCCA 8674050 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||| ||||||||||| | ||||||||| | ||||| | | |||| || |||||| Sbjct 8674049 GGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAAAT 8673990 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||||| | ||||||||| |||||||||||| | || |||||||| Sbjct 8673989 AGATCAGGTACCCAAAGAGCATAAAATAGATCTCTTGCTCGGTGCTCCTC 8673940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671002992299360